Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C04
         (910 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    28   7.4  
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate...    28   9.8  

>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 113 VGGT*ASQLPKLLTAQFLDSAALELYSTEDQVVGA-FVISNAEKSEGKIY 259
           VG +  ++ P  + A   D+A +E   ++D +    F +   EK+EGKIY
Sbjct: 52  VGVSSMNKSPVAIRATSSDTAVVETAQSDDVIFKEIFPVQRIEKAEGKIY 101


>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
           similar to menaquinone biosynthesis protein menD
           [SP|P17109][E. coli] ; Pfam HMM hit:
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
           acid synthase / 2-oxoglutarate decarboxylase
          Length = 894

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 264 YTLTLTIIELEKGVYEVRFKF*PHSSNYWAK 356
           YT+  TI   EK +++V   F P+  ++W K
Sbjct: 254 YTVEQTISSYEKSIFQVSSHFCPNVEDHWFK 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,620
Number of Sequences: 28952
Number of extensions: 288272
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)