Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C03
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.95 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.9  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 373 IPGGPVAKXQAACYLGQGDPPTWQ 444
           IPGG +A   +  Y G  D P WQ
Sbjct: 208 IPGGGIAAENSPLYWGGADTP-WQ 230


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 35  DLFFFRFIVNKF 70
           DLFFFRF  +KF
Sbjct: 221 DLFFFRFEKSKF 232


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 445 VAMWAGHLAPDSTQLXFLPR 386
           V +W+  + PDS +    PR
Sbjct: 510 VCLWSEQVGPDSLETRIWPR 529


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,584
Number of Sequences: 336
Number of extensions: 2669
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)