Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C03
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    66   6e-12
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    66   6e-12
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    29   0.79 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 32/69 (46%), Positives = 40/69 (57%)
 Frame = +2

Query: 320 FMLASHCVYVYRAXKRTPFPEVPWQKXKLRAIWGKVTRPHGNSGSVRAXFKSNLPXQAMG 499
           F L     YVY++ K         +  K+R IWG + RPHGNSG+VRA F  NLP +  G
Sbjct: 44  FYLGKRVCYVYKSSKAV-------RGSKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFG 96

Query: 500 HRIRVMLYP 526
             +RVMLYP
Sbjct: 97  SSLRVMLYP 105



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 196 ARQGRLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPLRLC 348
           A+  RLY KA    ++R        T+++K+EG   + +A FY GK  R+C
Sbjct: 3   AQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGK--RVC 51


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 33/69 (47%), Positives = 41/69 (59%)
 Frame = +2

Query: 320 FMLASHCVYVYRAXKRTPFPEVPWQKXKLRAIWGKVTRPHGNSGSVRAXFKSNLPXQAMG 499
           F L     +VY++ K       P +  K+R IWG V+RPHGNSG VRA F  NLP +  G
Sbjct: 44  FYLGKRICFVYKSNK-------PVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFG 96

Query: 500 HRIRVMLYP 526
             +RVMLYP
Sbjct: 97  ASLRVMLYP 105



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +1

Query: 196 ARQGRLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPLRLC 348
           A+  RLY KA    ++R        T+L+K+EG   + +A FY GK  R+C
Sbjct: 3   AQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGK--RIC 51


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 208 RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPLRLCVQS*XEDTIPGGP 387
           RLY      GY  G RN+   +   +   A   N AV+  G PL + V    E     G 
Sbjct: 76  RLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGV 135

Query: 388 VAK 396
           +AK
Sbjct: 136 IAK 138


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 412 YLGQGDPPTWQLWQCPSXVQV*PPXP 489
           Y+ + DP     W+CP      PP P
Sbjct: 26  YVNESDPKAKPQWECPVRGLTIPPPP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,059
Number of Sequences: 5004
Number of extensions: 41640
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)