Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C03
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     70   2e-12
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     69   3e-12
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    55   6e-08
05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405     31   1.1  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 407 RAIWGKVTRPHGNSGSVRAXFKSNLPXQAMGHRIRVMLYP 526
           R IWGKVTRPHGNSG VRA FKSNLP  +MG ++RV +YP
Sbjct: 70  RCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYP 109



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGK 333
           +K R G   RLY +    GYKR   NQ ENT+L+++EG   + +  +Y GK
Sbjct: 2   VKGRTGQRVRLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGK 52


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 28/41 (68%), Positives = 34/41 (82%)
 Frame = +2

Query: 404 LRAIWGKVTRPHGNSGSVRAXFKSNLPXQAMGHRIRVMLYP 526
           +R IWGKVTRPHGNSG VRA F+SNLP  +MG ++RV +YP
Sbjct: 68  IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYP 108



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGK 333
           +K RQG   RLY +    GYKR   NQ ENT+LL++EG   + +  +YAGK
Sbjct: 1   MKGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGK 51


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +2

Query: 404 LRAIWGKVTRPHGNSGSVRAXFKSNLPXQAM 496
           +R IWGKVTRPHGNSG VRA F+SNLP  +M
Sbjct: 68  IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGK 333
           +K RQG   RLY +    GYKR   NQ ENT+LL++EG   + +  +YAGK
Sbjct: 1   MKGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGK 51


>05_04_0321 + 20235221-20235628,20235874-20236839,20238313-20238405
          Length = 488

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 311 MQSFMLASHCVYVYRAXKRTPFPEVPWQKXKLRAIWGKVTRPH 439
           MQ  ++ SH +  +     +PFP+  W K  L   WGKV  P+
Sbjct: 420 MQIKVIWSHLLRNFELKLESPFPKTNWSKILLEP-WGKVMGPN 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,474
Number of Sequences: 37544
Number of extensions: 337633
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)