Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C03
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             68   8e-12
SB_53812| Best HMM Match : LANC_like (HMM E-Value=4.9e-17)             29   6.0  
SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)                   28   7.9  
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)                    28   7.9  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 34/66 (51%), Positives = 42/66 (63%)
 Frame = +2

Query: 320 FMLASHCVYVYRAXKRTPFPEVPWQKXKLRAIWGKVTRPHGNSGSVRAXFKSNLPXQAMG 499
           F L     +VYRA  +T   +   +  KLR IWGKVTR HGNSG VRA F+ NLP +AMG
Sbjct: 43  FYLGKRLAFVYRAKNKT-VAKGDKKATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMG 101

Query: 500 HRIRVM 517
             +RV+
Sbjct: 102 ATVRVI 107



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = +1

Query: 208 RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPL 339
           RLY K +  G+KRGLRNQ  NT+L+K+EG  +R +  FY GK L
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRL 49


>SB_53812| Best HMM Match : LANC_like (HMM E-Value=4.9e-17)
          Length = 283

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 438 CGRVTLPQ--IARSLXFCHGTSGNGVLXLALY 349
           CG V   +  + +    CHG +GNG   LALY
Sbjct: 205 CGEVIWRRGLLKKGYGICHGVAGNGYALLALY 236


>SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 211 LYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPLRLCVQS*XEDTIPGGPV 390
           +YAKAV +G K   RN        K  G + R +A +   K   L  +     ++P   V
Sbjct: 567 IYAKAVPSGVKLVERNPRHGECRHKKPGYEGRPEAAWGPKKSGSLAREPSTAPSLPCDLV 626

Query: 391 AKXQAACYL-GQG 426
           A   A  YL GQG
Sbjct: 627 AATSAKMYLAGQG 639


>SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)
          Length = 802

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 211 LYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPLRLCVQS*XEDTIPGGPV 390
           +YAKAV +G K G RN        K  G + R +A +   K   L  +     ++P   V
Sbjct: 554 IYAKAVPSGGKPGERNPRYGEWRHKKPGYEWRPEAAWGPKKSGSLAKEPSTAPSLPCDLV 613

Query: 391 AKXQAACYL-GQG 426
           A   A  YL GQG
Sbjct: 614 AATSAKMYLAGQG 626


>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
          Length = 773

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 211 LYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPLRLCVQS*XEDTIPGGPV 390
           +YAKAV +G K G RN        K  G + R +A +   K   L  +     ++P   V
Sbjct: 525 IYAKAVPSGGKPGERNPRYGEWRHKKPGYEWRPEAAWGPKKSGSLAKEPSTAPSLPCDLV 584

Query: 391 AKXQAACYL-GQG 426
           A   A  YL GQG
Sbjct: 585 AATSAKMYLAGQG 597


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,602,286
Number of Sequences: 59808
Number of extensions: 362474
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)