Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C03
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    74   1e-13
U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    28   9.2  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 34/69 (49%), Positives = 44/69 (63%)
 Frame = +2

Query: 320 FMLASHCVYVYRAXKRTPFPEVPWQKXKLRAIWGKVTRPHGNSGSVRAXFKSNLPXQAMG 499
           F      VY+Y+A  +T          + RAIWGK+TRPHGN+G+VRA F  N+P  A+G
Sbjct: 54  FYAGKRVVYLYKAHNKT-LKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALG 112

Query: 500 HRIRVMLYP 526
            RIRV+LYP
Sbjct: 113 KRIRVLLYP 121



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = +1

Query: 205 GRLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGK 333
           GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK
Sbjct: 16  GRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGK 58


>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 297 CSFNLEESGVLVLVA*TTLISCEYGLCVQPXLAGFDACEGPL-WLHRSCWSSXPLFLLVP 121
           CSF+L  S V++ V   T++S    +  +  + G       L W+H SC  S  LF +  
Sbjct: 17  CSFSLYASTVIMAVL-QTILSALLAILYRVKIEGDSVIVRILFWIHVSCSISALLFSVFC 75

Query: 120 *FKR 109
            FKR
Sbjct: 76  LFKR 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,262
Number of Sequences: 27780
Number of extensions: 270734
Number of successful extensions: 470
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)