Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C03
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    69   3e-12
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    69   3e-12
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    68   9e-12
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    68   9e-12

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 407 RAIWGKVTRPHGNSGSVRAXFKSNLPXQAMGHRIRVMLYP 526
           R IWGKVTRPHGNSG VRA F SNLP ++MG R+RV +YP
Sbjct: 70  RCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYP 109



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGK 333
           +K RQG   RLY +    GYKR   NQ  NT+L+++EG   + +  +Y GK
Sbjct: 2   VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 52


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 407 RAIWGKVTRPHGNSGSVRAXFKSNLPXQAMGHRIRVMLYP 526
           R IWGKVTRPHGNSG VRA F SNLP ++MG R+RV +YP
Sbjct: 70  RCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYP 109



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGK 333
           +K RQG   RLY +    GYKR   NQ  NT+L++VEG     +  +Y GK
Sbjct: 2   VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGK 52


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +2

Query: 407 RAIWGKVTRPHGNSGSVRAXFKSNLPXQAMGHRIRVMLYP 526
           R IWGKVTRPHGNSG VR+ F SNLP ++MG R+RV +YP
Sbjct: 69  RCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYP 108



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPL 339
           +K RQG   RLY +    GYKR   NQ  NT+L+++EG   + +  +Y GK L
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRL 53


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +2

Query: 407 RAIWGKVTRPHGNSGSVRAXFKSNLPXQAMGHRIRVMLYP 526
           R IWGKVTRPHGNSG VR+ F SNLP ++MG R+RV +YP
Sbjct: 69  RCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYP 108



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 190 IKARQG---RLYAKAVFTGYKRGLRNQXENTALLKVEGAKDRNDAVFYAGKPL 339
           +K RQG   RLY +    GYKR   NQ  NT+L+++EG   + +  +Y GK L
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,874,316
Number of Sequences: 28952
Number of extensions: 247852
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)