Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C02
         (1522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.078
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   2.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
 Frame = +2

Query: 548 PXQXTXPRKXAXXAPKXDXXXPQQXGXXPGGAPATXXRTXXXAXX--PLASXKXXXXXPX 721
           P     P   A   P      P      P  AP         A    P+ S       P 
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192

Query: 722 TPPQXAXXRAPPXXSXAPAANXPXRQSTXXPP--RTXDXTSEXP--XXQPPTXTXXXAPP 889
             P       PP  S AP AN   R S+  PP     + TSE P    + P+      PP
Sbjct: 193 AVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPP 252


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 834 PAXSPXTSLXPXXXXTPPXTAHGNPAPQ 917
           P+ +P ++L P     PP TA   PAP+
Sbjct: 443 PSATPTSALPPIGKFAPPTTAKAQPAPE 470


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 2/111 (1%)
 Frame = +2

Query: 566  PRKXAXXAPKXDXXXPQQXGXXPGGAPATXXRTXXXAXXPLASXKXXXXXPXT--PPQXA 739
            P   A   PK     P      P GAP     +      P+ S       P    PP  A
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154

Query: 740  XXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPPN 892
               APP    + AA      S+  PP      +  P   PP+       P+
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPP-VPKPAAGVPPVPPPSEAPPVPKPS 1204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.128    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,281
Number of Sequences: 5004
Number of extensions: 13671
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)