Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C02
         (1522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    36   0.084
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    32   1.4  
11_01_0066 - 536281-537196,537397-537452                               31   1.8  
01_01_0070 - 542603-542686,542803-543441                               31   3.2  
06_01_0486 - 3455030-3455770                                           29   7.3  
03_05_0019 + 19862171-19863049                                         29   9.7  

>01_03_0117 +
           12684729-12685886,12685978-12686145,12686292-12686336,
           12686438-12687280
          Length = 737

 Score = 35.9 bits (79), Expect = 0.084
 Identities = 27/115 (23%), Positives = 34/115 (29%)
 Frame = +2

Query: 566 PRKXAXXAPKXDXXXPQQXGXXPGGAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXX 745
           P +    +P  +          P  APA        A  P A  K     P  PPQ    
Sbjct: 197 PAEPPVPSPSPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQ---- 252

Query: 746 RAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPPNRXRQSS 910
           R P   +  P +  P    T  PP      +  P   PP        P+    SS
Sbjct: 253 RPPAPATKPPPSFPPQLAPTMPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSS 307


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/58 (25%), Positives = 20/58 (34%)
 Frame = +2

Query: 716 PXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPP 889
           P  PP     R PP    +  +    +Q T   PR    ++  P   PP       PP
Sbjct: 307 PPAPPPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPPP 364


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +2

Query: 716 PXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPP 889
           P +PP  +    PP    +PA+  P   +T  PP     T+      PP  T    PP
Sbjct: 212 PASPPPPSIATPPP----SPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPP 265


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 28/102 (27%), Positives = 30/102 (29%)
 Frame = +2

Query: 566 PRKXAXXAPKXDXXXPQQXGXXPGGAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXX 745
           P   A  AP      P      P  APA    T        A        P TPP     
Sbjct: 49  PPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPPPVTPPPV--- 105

Query: 746 RAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXT 871
             PP  S  PA   P    +  PP      +E P   PP  T
Sbjct: 106 -TPPPVSPPPATPPPALPPSTPPP--VAAPAEAPAALPPATT 144


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +2

Query: 725 PPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPP 862
           PP+      PP     P+ + P    T  PP T       P   PP
Sbjct: 57  PPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPP 102


>03_05_0019 + 19862171-19863049
          Length = 292

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 19/81 (23%), Positives = 25/81 (30%)
 Frame = +2

Query: 659 RTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTS 838
           RT   A  P A+       P  PP+    + PP     P  + P R       R      
Sbjct: 159 RTKPTAAAP-ATPPAAKRPPEPPPKTTQRQQPPGPPPKPQPSAPKRPQVVQMRRPAPAKQ 217

Query: 839 EXPXXQPPTXTXXXAPPNRXR 901
           + P   PP        P R +
Sbjct: 218 QRPTILPPPPVVKRPSPTRGK 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.128    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,242,596
Number of Sequences: 37544
Number of extensions: 203744
Number of successful extensions: 447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)