Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C02
         (1522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.60 
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   7.4  

>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 19/59 (32%), Positives = 23/59 (38%)
 Frame = +2

Query: 716 PXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPPN 892
           P +PP  A   APP  + APAA  P       PP      +  P    P      APP+
Sbjct: 54  PPSPPAAAPA-APPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPPPAPPH 111


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +2

Query: 725 PPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPP 889
           PP  +   APP  S       P R S   PP     T+  P   PP+ +    PP
Sbjct: 288 PPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTA--PPPPPPSRSSQRPPP 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.128    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,294
Number of Sequences: 59808
Number of extensions: 159392
Number of successful extensions: 236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4941604117
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)