Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C02
         (1522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    30   3.7  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    29   6.5  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 4/123 (3%)
 Frame = +2

Query: 548 PXQXTXPRKXAXXAPKXDXXXPQQXGXXPGGAPATXXRTXXXAXXPLASXKXXXXXPXTP 727
           P +    +     AP      PQQ        P    +    A  P+            P
Sbjct: 310 PPKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKPAVQQ---AQAPVVQQAPAPPVQQAP 366

Query: 728 PQXAXXRAPPXXSXAP---AANXPX-RQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPPNR 895
           P+    +APP     P       P  +Q+T  PP+     +      PP  T   APP +
Sbjct: 367 PKPTPQQAPPVRQNPPMPAVQQAPSSQQATQAPPKPAPQQAPPVQQNPPKPTPSPAPPAQ 426

Query: 896 XRQ 904
             Q
Sbjct: 427 KAQ 429


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +2

Query: 725 PPQXAXXRAPPXXSXAPAANXPXRQSTXX-PPRTXDXTSEXPXXQPPTXTXXXAPP 889
           PP+    R  P  +  P    P  +     PP+T    +E P  +PP  T     P
Sbjct: 367 PPKTDPPRTEPPKTEPPTTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEP 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.128    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,794
Number of Sequences: 27780
Number of extensions: 121969
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4369516058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)