SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C02
         (1522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    36   0.093
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    31   2.6  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    30   3.5  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    29   6.1  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    29   6.1  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   6.1  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   6.1  

>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 35.5 bits (78), Expect = 0.093
 Identities = 23/85 (27%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
 Frame = +2

Query: 641 APATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAAN--XPXRQSTXXP 814
           AP T          P  S       P TPP      +PP    AP  +   P  Q    P
Sbjct: 45  APPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSP 104

Query: 815 PRTXDXTSEXPXXQPPTXTXXXAPP 889
           P +    S  P   PP  T     P
Sbjct: 105 PASAPTVSPPPVSPPPAPTSPPPTP 129


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +2

Query: 722 TPPQXAXXRAPPXXSXAPAANXPXRQST-XXPPRTXDXTSEXPXXQPPTXTXXXAPP 889
           +PP     + P      P+ + P  Q T   PP T   T   P   PPT     +PP
Sbjct: 577 SPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPTYYATQSPPPPPPPTYYAVQSPP 633


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
 Frame = +2

Query: 716 PXTPPQXAXXRAPPXXSXAPAA----NXPXRQSTXXPPRTXDXTSE-----XPXXQPPTX 868
           P  PPQ      PP  S +P A    N P + S   P  T     E      P    PT 
Sbjct: 106 PPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTP 165

Query: 869 TXXXAPP 889
           T   +PP
Sbjct: 166 TTTTSPP 172


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/84 (22%), Positives = 25/84 (29%)
 Frame = +2

Query: 635 GGAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXP 814
           G AP +          P          P + P       PP  +  P AN P   S+  P
Sbjct: 20  GQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSS-PP 78

Query: 815 PRTXDXTSEXPXXQPPTXTXXXAP 886
           P +    +  P   PP       P
Sbjct: 79  PASPPPATPPPVASPPPPVASPPP 102


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/84 (22%), Positives = 25/84 (29%)
 Frame = +2

Query: 635 GGAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXP 814
           G AP +          P          P + P       PP  +  P AN P   S+  P
Sbjct: 20  GQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSS-PP 78

Query: 815 PRTXDXTSEXPXXQPPTXTXXXAP 886
           P +    +  P   PP       P
Sbjct: 79  PASPPPATPPPVASPPPPVASPPP 102


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +2

Query: 722 TPPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPP 889
           TP Q     AP   + +P+AN P    T  PP +   T   P   PPT T     P
Sbjct: 38  TPSQSPRATAP---APSPSANPPPSAPTTAPPVSQPPTESPP--APPTSTSPSGAP 88


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
 Frame = +2

Query: 638 GAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXX---SXAPAANXPXRQSTX 808
           G P     T   +  P  +         +PP  +    PP     S  P  + P    T 
Sbjct: 48  GNPPETTNTPAQSSPPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTE 107

Query: 809 XPPRTXDXTSEXPXXQPPTXTXXXAPP 889
            PP     +S  P   PP      APP
Sbjct: 108 APPPANPVSSPPPESSPPPPPPTEAPP 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.128    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,681
Number of Sequences: 28952
Number of extensions: 125206
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)

- SilkBase 1999-2023 -