BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP05_F_C02 (1522 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 36 0.093 At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 31 2.6 At5g38560.1 68418.m04662 protein kinase family protein contains ... 30 3.5 At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 6.1 At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 6.1 At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 6.1 At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 6.1 >At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19) non-consensus splice site at the intron:exon boundary (AT:exon) Length = 247 Score = 35.5 bits (78), Expect = 0.093 Identities = 23/85 (27%), Positives = 26/85 (30%), Gaps = 2/85 (2%) Frame = +2 Query: 641 APATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAAN--XPXRQSTXXP 814 AP T P S P TPP +PP AP + P Q P Sbjct: 45 APPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSP 104 Query: 815 PRTXDXTSEXPXXQPPTXTXXXAPP 889 P + S P PP T P Sbjct: 105 PASAPTVSPPPVSPPPAPTSPPPTP 129 >At1g62440.1 68414.m07044 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 826 Score = 30.7 bits (66), Expect = 2.6 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Frame = +2 Query: 722 TPPQXAXXRAPPXXSXAPAANXPXRQST-XXPPRTXDXTSEXPXXQPPTXTXXXAPP 889 +PP + P P+ + P Q T PP T T P PPT +PP Sbjct: 577 SPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPTYYATQSPPPPPPPTYYAVQSPP 633 >At5g38560.1 68418.m04662 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 681 Score = 30.3 bits (65), Expect = 3.5 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Frame = +2 Query: 716 PXTPPQXAXXRAPPXXSXAPAA----NXPXRQSTXXPPRTXDXTSE-----XPXXQPPTX 868 P PPQ PP S +P A N P + S P T E P PT Sbjct: 106 PPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTP 165 Query: 869 TXXXAPP 889 T +PP Sbjct: 166 TTTTSPP 172 >At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 Length = 176 Score = 29.5 bits (63), Expect = 6.1 Identities = 19/84 (22%), Positives = 25/84 (29%) Frame = +2 Query: 635 GGAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXP 814 G AP + P P + P PP + P AN P S+ P Sbjct: 20 GQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSS-PP 78 Query: 815 PRTXDXTSEXPXXQPPTXTXXXAP 886 P + + P PP P Sbjct: 79 PASPPPATPPPVASPPPPVASPPP 102 >At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to gi|10880495|gb|AAG24277 Length = 191 Score = 29.5 bits (63), Expect = 6.1 Identities = 19/84 (22%), Positives = 25/84 (29%) Frame = +2 Query: 635 GGAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXXSXAPAANXPXRQSTXXP 814 G AP + P P + P PP + P AN P S+ P Sbjct: 20 GQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSS-PP 78 Query: 815 PRTXDXTSEXPXXQPPTXTXXXAP 886 P + + P PP P Sbjct: 79 PASPPPATPPPVASPPPPVASPPP 102 >At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical to gi_3883128_gb_AAC77827 Length = 133 Score = 29.5 bits (63), Expect = 6.1 Identities = 19/56 (33%), Positives = 23/56 (41%) Frame = +2 Query: 722 TPPQXAXXRAPPXXSXAPAANXPXRQSTXXPPRTXDXTSEXPXXQPPTXTXXXAPP 889 TP Q AP + +P+AN P T PP + T P PPT T P Sbjct: 38 TPSQSPRATAP---APSPSANPPPSAPTTAPPVSQPPTESPP--APPTSTSPSGAP 88 >At1g26150.1 68414.m03192 protein kinase family protein similar to Pto kinase interactor 1 GI:3668069 from [Lycopersicon esculentum] Length = 760 Score = 29.5 bits (63), Expect = 6.1 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 3/87 (3%) Frame = +2 Query: 638 GAPATXXRTXXXAXXPLASXKXXXXXPXTPPQXAXXRAPPXX---SXAPAANXPXRQSTX 808 G P T + P + +PP + PP S P + P T Sbjct: 48 GNPPETTNTPAQSSPPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTE 107 Query: 809 XPPRTXDXTSEXPXXQPPTXTXXXAPP 889 PP +S P PP APP Sbjct: 108 APPPANPVSSPPPESSPPPPPPTEAPP 134 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.311 0.128 0.403 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,101,681 Number of Sequences: 28952 Number of extensions: 125206 Number of successful extensions: 334 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 300 length of database: 12,070,560 effective HSP length: 84 effective length of database: 9,638,592 effective search space used: 4067485824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits)
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