Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B24
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697...    31   1.3  
06_03_0178 + 17594062-17595576                                         29   5.4  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   5.4  

>02_02_0119 +
           6978697-6979045,6979519-6979581,6979757-6979866,
           6979969-6980154,6980266-6980361,6980493-6980564,
           6980798-6980909,6982448-6982534,6982680-6983872
          Length = 755

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 253 PIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDPPPFPGA 372
           P +  PY   PP    P G G Y    N   Y  PPP+PGA
Sbjct: 641 PPNTSPYGQAPPPGSAPGGYGQYGYSQNQQGYGAPPPYPGA 681


>06_03_0178 + 17594062-17595576
          Length = 504

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 205 TPNPFFAQP--TVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARG 378
           TPNPF+ +      NGY  +  R     P  D +P     E ID     +DP   PG  G
Sbjct: 330 TPNPFYVESGKNANNGYSFV--RTPSPAPGVDESPFMTWGE-IDGTPLRLDPEETPGGSG 386

Query: 379 GK*RIS*KI 405
           G  R   KI
Sbjct: 387 GSDRAHFKI 395


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 280 NPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARGG 381
           +PP  Y+  G G      G YY  PPP  G  GG
Sbjct: 92  SPPPPYSGGGGGSSTGGGGIYY--PPPTGGGGGG 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,718
Number of Sequences: 37544
Number of extensions: 296723
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)