Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B24
         (942 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)          31   1.0  
SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)                   30   2.4  
SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)                     30   2.4  
SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_6711| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_4673| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.2  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   7.2  

>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
          Length = 142

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = -1

Query: 351 VHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSYSRLGKEWIRGH 202
           V ++  V+    AVS+ V V G + D RA++N FV V Y+  G+ ++R H
Sbjct: 24  VSLMVAVIGGVYAVSLMVAVIGCLYDGRAIMN-FV-VKYTPSGQYYLRPH 71


>SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)
          Length = 291

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 135 CWLWPTLKPPXKVVENA----DSVVINDPESILC 224
           C+L PT+  P +V +N+    D++ +N PE + C
Sbjct: 2   CYLIPTIDKPTRVHKNSATLIDNIFVNSPEQVTC 35


>SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)
          Length = 353

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 135 CWLWPTLKPPXKVVENA----DSVVINDPESILC 224
           C+L PT+  P +V +N+    D++ +N PE + C
Sbjct: 260 CYLIPTIDKPTRVHKNSATLIDNIFVNSPEQVTC 293


>SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 135 CWLWPTLKPPXKVVENA----DSVVINDPESILC 224
           C+L PT+  P +V +N+    D++ +N PE + C
Sbjct: 65  CYLIPTIDKPTRVHKNSATLIDNIFVNSPEQVTC 98


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +1

Query: 208 PNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDP-PPFP 366
           P P+   P     Y P  N PY   P   Y P  N  Y P  N  Y   P PP+P
Sbjct: 105 PPPY--PPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYP 157



 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 208 PNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDPPPFP 366
           PNP +  P     Y P  N PY   P   Y P+ N  Y P  N  Y   PP +P
Sbjct: 112 PNPPYPPPP-NAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPY--PPPLYP 162


>SB_6711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 247 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPF 363
           YEP+D+    +  P D + N   YEP+D    Y+  PP+
Sbjct: 59  YEPLDDDNLSIYGPLD-DDNLYIYEPLDEDNLYIYEPPY 96


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 396 RYSLLPTASTRERGRVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVA 244
           RY  + +     R  V  +  V+ R+VA S+RVV+   +  VR V+ R+VA
Sbjct: 811 RYVAIASVRVVMRRYVASVRVVMRRYVA-SVRVVMRRYVTSVRVVMRRYVA 860


>SB_4673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 175 WKTLTQL*SMTPNPFFAQPTVGNGYE-PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVD 351
           WKTL +    +P P  +  T  + Y   ++ R Y  N  ++ +   NG+       +Y  
Sbjct: 27  WKTLLEW-GDSPTPVVSMATTPSSYVVQVNGRTYRRNRTRNLDSRVNGFSTFSKRLFYRL 85

Query: 352 PPPFP 366
           P  FP
Sbjct: 86  PTYFP 90


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = +1

Query: 208 PNPFFAQPTVGNGYEPIDNRP---YIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARG 378
           P P+   P  G G  P  N P   Y   PP+ Y P   GY        Y   PP  G  G
Sbjct: 206 PPPYV--PQEGGGIPP-QNHPLTNYPAPPPQGYAPPPGGYPGAPPAGGYPGAPPPGGYPG 262

Query: 379 G 381
           G
Sbjct: 263 G 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,100
Number of Sequences: 59808
Number of extensions: 299451
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)