Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B23
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    29   1.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   1.1  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    28   1.9  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   2.5  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   3.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    27   3.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.8  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 484 NAVHSFILPNGPCTSHQ*CYXNNKKN 407
           N +HS+ILP+ PCTS      N+  N
Sbjct: 62  NILHSYILPDKPCTSRDNTSGNSLLN 87


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 32   LKXFDCRWPNFLVCRTSLASKFKQKFHFDNVPHLLLNLKPNNGSQRM 172
            L  F CRW +FL  +  LA +      F  + HL   L  N  ++ +
Sbjct: 1520 LSCFFCRWEDFLKQQHKLADEEASLLQFSRLEHLRKQLAQNTFNENI 1566


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +1

Query: 424 DNTTDGSCTVRWGE*NYV--LHCLSLW 498
           D+     CTV WG  N+    HC+S W
Sbjct: 60  DSAAAQECTVAWGTCNHAFHFHCISRW 86


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 196 QFIVDDVSKIIKEAIENSIGGTAYQHKQ 279
           +F   D+S+ +  AI N+IG  AY H Q
Sbjct: 306 EFAPQDISRSLLLAISNNIGQIAYLHAQ 333


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 154 IWFQVKK*VWNVIKMKFLFEFRSQRSSTN*KIWPSAIKXL 35
           +W Q    +W+V  ++ L ++RS RS  + + WP  I+ +
Sbjct: 212 VWMQYCSFLWSVFGVQCLNDYRSFRSVLD-RYWPKFIQPI 250


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +1

Query: 202 IVDDVSKIIKEAIENSIGGTAYQHKQCQPNGTS---XSC*VMSGAVD*VTKTIQYVVTXH 372
           ++DDVS  +  ++ NS+ G A  + Q   N TS    +  V  G+V     T    ++ +
Sbjct: 106 VLDDVSFGVFSSLANSVTGYASNYTQSSSNSTSTMNSTGSVSGGSVYPTNSTTNSSISWN 165

Query: 373 NTAEEWCRTAYSSS 414
           ++      T+ SSS
Sbjct: 166 SSTSAATNTSSSSS 179


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +1

Query: 391 CRTAYSSSCYXDNTTDGSCTVRWGE*NYVL--HCLSLW 498
           CR  +   C    +   +C + WG+  ++   HC+  W
Sbjct: 27  CRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNW 64


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 441 LVHGPLGRIKLCTALSQSLGLAYTWI 518
           LV   LGR+ + T LS+ LGL   W+
Sbjct: 559 LVKNKLGRVYVDTRLSRMLGLPPLWV 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,555
Number of Sequences: 5004
Number of extensions: 47458
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)