Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B23
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20570.1 68418.m02442 ring-box protein-related similar to rin...    28   8.8  
At3g42830.1 68416.m04485 ring-box protein Roc1/Rbx1/Hrt1, putati...    28   8.8  

>At5g20570.1 68418.m02442 ring-box protein-related similar to
           ring-box protein 1 GI:4769004 from [Homo sapiens]
          Length = 118

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 427 NTTDGSCTVRWGE*NYV--LHCLSLW 498
           + T   CTV WG  N+    HC+S W
Sbjct: 72  SATSEECTVAWGVCNHAFHFHCISRW 97


>At3g42830.1 68416.m04485 ring-box protein Roc1/Rbx1/Hrt1, putative
           E3 ubiquitin ligase, SCF complex subunit; contains
           similarity to ring-box protein 1 RBX1 GI:4769004 from
           [Homo sapiens]
          Length = 115

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 427 NTTDGSCTVRWGE*NYV--LHCLSLW 498
           + T   CTV WG  N+    HC+S W
Sbjct: 69  SATSEECTVAWGVCNHAFHFHCISRW 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,259
Number of Sequences: 28952
Number of extensions: 245241
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)