Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B22
         (1078 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   5.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   7.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   7.0  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 439 GKTDRDRLYGH 471
           GK D+D +YGH
Sbjct: 73  GKRDKDAIYGH 83


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 96  WSQIQKWLFQRVVXLIPPGNFP 161
           W Q+++ + +  V  IPP  FP
Sbjct: 199 WMQVKRNVPKPTVPKIPPAEFP 220


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 96  WSQIQKWLFQRVVXLIPPGNFP 161
           W Q+++ + +  V  IPP  FP
Sbjct: 199 WMQVKRNVPKPTVPKIPPAEFP 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,560
Number of Sequences: 336
Number of extensions: 2908
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30929100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)