Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B22
         (1078 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   3.4  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   7.9  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 433 SSFEETPLVIPTFYPKSPLVGSLPKVPXDLSLP 335
           S F + P +   + PK+PL+    + P D ++P
Sbjct: 149 SCFTKLPAISLVYNPKTPLISQYEEFPLDTAVP 181


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 197 MPLPGXTAEEXYPESXRPNFSKGQVPNTLXEYFNELXS 310
           +P+P  + ++   +  R +F+KG VPN    YF+ L S
Sbjct: 475 VPVPQRSTKDQLLDLVRKHFNKGAVPN-WAAYFDTLSS 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,390
Number of Sequences: 5004
Number of extensions: 50665
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)