Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B22
         (1078 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            30   2.8  
SB_39655| Best HMM Match : NUDIX (HMM E-Value=1e-22)                   29   6.5  
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)                 29   8.5  

>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 60   HISWSRRQXEKPWSQIQKWLFQRVVXLIPPGNFPLVLPLKRLKVFXCPSLGLPQKKXIP 236
            ++S S    +  +++   W+   V  L PPG+ PL+   K LK    P    P  K +P
Sbjct: 1178 NMSSSSLPSDAEFNEFHPWIVDNVRKLPPPGSPPLLPDDKELKDIHGPGTVGPSSKQLP 1236


>SB_39655| Best HMM Match : NUDIX (HMM E-Value=1e-22)
          Length = 322

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 59  AHFLVSKAXRKTLVTNSKMVIPKGGLXNPAWQFPFGIAVE 178
           A  +V++   K LV   +     G L  P W+FP G++ E
Sbjct: 137 AGIVVNEEENKVLVVQDRQKYKMGVLKKPIWKFPGGLSDE 176


>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
          Length = 827

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 529 VLXDP---PXTGNFGLQVPKYSGXRKACPGQF 443
           VL DP   P TG FGL V K+S     CP +F
Sbjct: 428 VLADPEELPRTGAFGLDVEKFSTMVGDCPIEF 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,425,078
Number of Sequences: 59808
Number of extensions: 390447
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3260783075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)