Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B21
(914 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 32 0.32
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 33 0.43
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 32 0.74
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 4.0
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 33.5 bits (73), Expect = 0.24
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 709 GGGXPPPPPXXGGGXXFPXXPP 774
GG PPPPP GG P PP
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPP 937
Score = 31.5 bits (68), Expect = 0.98
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 369 GXGGPPXPPXXGGXXXXXFXXXAGGGXXFXXPPPXXXXXXXXXPPPP 509
G PP PP GG GGG PPP PPPP
Sbjct: 949 GGNAPPPPPPPGGS-----APPPGGGAPPLPPPPGGSAPPPPPPPPP 990
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 709 GGGXPPPPPXXGGGXXFPXXPP 774
GGG PP PP GG P PP
Sbjct: 967 GGGAPPLPPPPGGSAPPPPPPP 988
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 31.9 bits (69), Expect = 0.74
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +1
Query: 709 GGGX--PPPPPXXGGGXXFPXXPP 774
GGG PPPPP GGG P PP
Sbjct: 658 GGGMFPPPPPPPPGGGVPGPPKPP 681
Score = 30.7 bits (66), Expect(2) = 0.32
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 712 GGXPPPPPXXGGGXXFPXXPP 774
GG PPPPP GG FP PP
Sbjct: 650 GGIPPPPP---GGGMFPPPPP 667
Score = 21.0 bits (42), Expect(2) = 0.32
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +1
Query: 853 PPXPXXXAGXLXFLSXPPPP 912
PP P G + PPPP
Sbjct: 664 PPPPPPPGGGVPGPPKPPPP 683
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 33.1 bits (72), Expect = 0.32
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 773 GGXXGKXXPPPXXGGGGGXPPP 708
GG G PPP G GGG PPP
Sbjct: 485 GGGQGWGQPPPGAGQGGGPPPP 506
Score = 31.9 bits (69), Expect = 0.74
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 468 GGGXKXXTPPPXXXKXXXXFXPPXXGGGGGPXPP 367
GGG PPP + PP G GGGP PP
Sbjct: 485 GGGQGWGQPPPGAGQGGGP-PPPGAGQGGGPPPP 517
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 773 GGXXGKXXPPPXXGGGGGXPPP 708
G G PPP G GGG PPP
Sbjct: 496 GAGQGGGPPPPGAGQGGGPPPP 517
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 773 GGXXGKXXPPPXXGGGGGXPPP 708
G G PPP G GGG PPP
Sbjct: 529 GAGQGGGPPPPGAGQGGGPPPP 550
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 773 GGXXGKXXPPPXXGGGGGXPPP 708
G G PPP G GGG PPP
Sbjct: 518 GAGQGWGQPPPGAGQGGGPPPP 539
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 773 GGXXGKXXPPPXXGGGGGXPPP 708
G G PPP G GGG PPP
Sbjct: 551 GAGQGWGQPPPGAGQGGGPPPP 572
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 465 GGXKXXTPPPXXXKXXXXFXPPXXGGGGGPXPP 367
G + PPP PP G GGGP PP
Sbjct: 507 GAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPP 539
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 467 GGGXKXXPPPRXXXKXXXXXPPPRXGXGGAPXPP 366
G G PPP + PPP G GG P PP
Sbjct: 540 GAGQGGGPPPPGAGQGWGQ-PPPGAGQGGGPPPP 572
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 468 GGGXKXXTPPPXXXKXXXXFXPPXXGGGGGPXPP 367
G G PPP + PP G GGGP PP
Sbjct: 518 GAGQGWGQPPPGAGQGGGP-PPPGAGQGGGPPPP 550
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 468 GGGXKXXTPPPXXXKXXXXFXPPXXGGGGGPXPP 367
G G PPP + PP G GGGP PP
Sbjct: 540 GAGQGGGPPPPGAGQGWGQ-PPPGAGQGGGPPPP 572
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 467 GGGXKXXPPPRXXXKXXXXXPPPRXGXGGAPXPP 366
G G PPP + PPP G GG P PP
Sbjct: 573 GAGQGGPPPPGAGQEGP---PPPGAGQGGGPPPP 603
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 770 GXXGKXXPPPXXGGGGGXPPP 708
G + PPP G GGG PPP
Sbjct: 583 GAGQEGPPPPGAGQGGGPPPP 603
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 700 GXXGGGXPPPPPXXGGGXXFPXXPP 774
G GG PPPPP GG P PP
Sbjct: 670 GQAGGAPPPPPPPLPGGAAPPPPPP 694
Score = 31.5 bits (68), Expect = 0.98
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 709 GGGXPPPPPXXGGGXXFPXXP 771
GG PPPPP GGG P P
Sbjct: 685 GGAAPPPPPPIGGGAPPPPPP 705
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 470 GGGGXKXXPPPRXXXKXXXXXPPPRXGXGGAPXPPXFF 357
G G PPP PPP G G P PP F
Sbjct: 670 GQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGF 707
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -1
Query: 476 GXGGGGXKXXPPPRXXXKXXXXXPPPRXGXGGAPXPPXF 360
G GG PPP PPP G P PP F
Sbjct: 669 GGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPGF 707
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 700 GXXGGGXPPPPPXXGGGXXFPXXPP 774
G GG PPPPP G P PP
Sbjct: 669 GGQAGGAPPPPPPPLPGGAAPPPPP 693
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 749 PPPXXGGGGGXPPPXXP 699
PPP G GG PPP P
Sbjct: 665 PPPPGGQAGGAPPPPPP 681
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 31.9 bits (69), Expect = 0.74
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 446 PPPRXXXKXXXXXPPPRXGXGGAPXPP 366
PPP PPP G GGAP PP
Sbjct: 308 PPPGGAPPPPPPPPPPPPGDGGAPPPP 334
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 469 GGGXKXXXPPPAXXKXXXXFXPPXXGGXGGPPXP 368
GGG PPPA PP GG PP P
Sbjct: 286 GGGAPVPPPPPADGSAPAPPPPPPPGGAPPPPPP 319
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 467 GGGXKXXPPPRXXXKXXXXXPPPRXGXGGAPXPP 366
GGG PPP PPP GGAP PP
Sbjct: 286 GGGAPVPPPPPADGSAPAPPPPP--PPGGAPPPP 317
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 381 PPXPPXXGGXXXXXFXXXAGGGXXFXXPPPXXXXXXXXXPPPP 509
PP PP G GG PPP PPPP
Sbjct: 292 PPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPPP 334
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 749 PPPXXGGGGGXPPPXXP 699
PPP G GG PPP P
Sbjct: 321 PPPPPGDGGAPPPPPPP 337
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 700 GXXGGGXPPPPPXXGGGXXFPXXPP 774
G GG PPPPP G G P PP
Sbjct: 219 GGPPGGYPPPPPPPGAGD--PAYPP 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,928
Number of Sequences: 59808
Number of extensions: 239987
Number of successful extensions: 1867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -