Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B19
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 38 0.001
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 36 0.010
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.29
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 30 0.39
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.68
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.90
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 1.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.2
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 4.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 8.4
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 669
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 670 SNTTGTLSPPCTKATSCSSST 732
+T + S P A++ S+ T
Sbjct: 361 PTSTSSTSTPPPPASTSSTGT 381
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/80 (33%), Positives = 39/80 (48%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS 672
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 673 NTTGTLSPPCTKATSCSSST 732
+ S P T T+C++ST
Sbjct: 413 VPPTSSSTPLT-TTNCTTST 431
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 670 ---SNTTGTLSPPCTKATSCSSSTP 735
+++T T PP + +++ +SS+P
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSP 331
Score = 31.9 bits (69), Expect = 0.13
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 670 -------SNTTGTLSPPCTKATSCSSS 729
S+T+ + P T +T +SS
Sbjct: 250 TVPPTSTSSTSIPIPPTSTSSTDTNSS 276
Score = 29.1 bits (62), Expect = 0.90
Identities = 28/83 (33%), Positives = 37/83 (44%)
Frame = +1
Query: 484 LHSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPL 663
L++ TP T P S S W +T P T ++ S +T SST I PL
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTT-------PITGTSTSKVT--------SSTSI-PL 641
Query: 664 TPSNTTGTLSPPCTKATSCSSST 732
T +N T T T ++ SSST
Sbjct: 642 TSTNRTSTTFTSSTSISTSSSST 664
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
S P T + + S+PP +T + + PP + S+ +ST P +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS-------------TSTPPPPAST 376
Query: 670 SNTTGTLSPPCTKATSCSSST 732
S+T + SP + +TSC++ST
Sbjct: 377 SSTGTSSSPLLSTSTSCTTST 397
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCP--PRTNST*SSITRKVLVMTVSSTVIAPLTPS 672
P T + + S+PP ++ ++ P P T+++ +SI + + T +PL +
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 225
Query: 673 NTTGTLSPPCTKATSCSSSTP 735
+T+ T S S S STP
Sbjct: 226 STSCTTSTSIPTGGSSSLSTP 246
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMT--VSSTVIAPL 663
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 664 TPSNTTGTLSPPCTKATS 717
+ S TT T PP +T+
Sbjct: 336 STSCTTSTSIPPTGNSTT 353
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCP-PRTNST*SSITRKVLVMTVSSTVIA-PL 663
SV + P +P + C +T S P T T ++ T + S+ V + PL
Sbjct: 432 SVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPL 491
Query: 664 TPSNTTGTLSPPCTKATSCSSS 729
T +N T + S P T SS+
Sbjct: 492 TTTNCTTSTSVPYTSTPVTSSN 513
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSST 732
+T TS PP T+ ++ T ++T + P T NTT T +PP T S ++
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVV 122
Query: 733 P 735
P
Sbjct: 123 P 123
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +1
Query: 535 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKAT 714
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVN 129
Query: 715 SCSSSTP 735
+ + P
Sbjct: 130 TTTVVPP 136
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS 672
V P + + ++PP T+ T+ + PP T+ ++ T S+T + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 673 NTTGTLSPPCTKATSCSSSTP 735
T T+ PP T + + P
Sbjct: 128 VNTTTVVPPTTHVNTTTVVPP 148
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSST 732
TT F+S S T+S S+ ++S V P T N+T T PP T + ++
Sbjct: 46 TTSFSSASTETSTHSVTST--------NITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVP 97
Query: 733 P 735
P
Sbjct: 98 P 98
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.7 bits (66), Expect = 0.29
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 589 TNST*SSITRKVLVMTVSSTVIAPLTP--SNTTGTLSPPCTKATSCSSSTP 735
T T SS+ +T SSTV+ TP S+T SPP T +T +SSTP
Sbjct: 1618 TPITSSSVLNSSTPIT-SSTVLNSSTPITSSTALNTSPPITSSTVVNSSTP 1667
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 652 IAPLTPSNTTGTLSPPCTKATSCSSS-TPRVQQCYXMPN 765
+ PL PS+ +G LSPP KA S S P + +P+
Sbjct: 146 VHPLRPSHVSGPLSPPEPKAASVDHSINPAYNASFRLPD 184
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.68
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 575 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 474
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 219 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 362
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 707 FVHGGLKVPVVFEGVSGAITVDDTVIT 627
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Frame = +1
Query: 505 TKPARKSPGSLPPCWKTTEFTSRSCPPRT--NST*SSITRKVLVMTVSSTVIA-----PL 663
T A +P S +T TS S P + NST ++ + +V+ST PL
Sbjct: 316 TTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPL 375
Query: 664 TPSNTTGTLSPPCTKATSCSSST 732
T N+T S T TS +S+T
Sbjct: 376 TSVNSTSATSASSTPLTSANSTT 398
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 550 KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLS-PPCTKAT 714
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S PP T T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPTTSFT 905
Score = 27.5 bits (58), Expect = 2.7
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 523 SPGSLP-PCWKTTEFTSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLS 693
+P S P +T TS S P T NST ++ + +VSS T +++T S
Sbjct: 286 TPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSS 345
Query: 694 PPCTKATSCSSSTP 735
T ATS +SSTP
Sbjct: 346 VNSTTATS-ASSTP 358
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSST 732
+T +S + T+++ + +T V T +S PLT N+T S T TS +S+T
Sbjct: 454 STPLSSVNSTTATSASSTPLT-SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTT 512
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 186 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 302
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 661 LTPSNTTGTLSPPCTKATSCSSSTPRV 741
+ PSNTT + SPP T S++ P +
Sbjct: 454 VVPSNTTISSSPPLTSPVKTSANIPNL 480
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 423 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 515
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 734 GVDEEHDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRV 612
GVD HD+ H LK + VSG++ + D FR+
Sbjct: 468 GVDYLHDMGVAHRDLKPENLLLTVSGSLKITDFGNGECFRM 508
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 322 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 143
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 142 EASAHTARTKA 110
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,074
Number of Sequences: 5004
Number of extensions: 62436
Number of successful extensions: 330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -