Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B19
(900 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066) 35 0.10
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 32 0.73
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 31 0.96
SB_55330| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 30 2.9
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 29 3.9
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 29 5.1
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 29 5.1
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 29 6.8
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 29 6.8
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 29 6.8
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11) 29 6.8
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1) 28 8.9
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 28 8.9
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 28 8.9
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 8.9
SB_56432| Best HMM Match : ATP-synt_8 (HMM E-Value=5.3) 28 8.9
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 8.9
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 28 8.9
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 28 8.9
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 39.1 bits (87), Expect = 0.005
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS- 672
TP T P+ S S+P T + P T ST S+++ + T ST P TPS
Sbjct: 203 TPST-PSTPSTLSMP---STPSMPNTPSTPSTPSTPSTLSTPITPST-PSTPSTPSTPSM 257
Query: 673 -NTTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
+T T S P T +T C+ +TP MP+
Sbjct: 258 PSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPS 289
Score = 39.1 bits (87), Expect = 0.005
Identities = 32/90 (35%), Positives = 38/90 (42%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 675
TP T P+ S S P T S C P T ST S+ + T ST P TPS
Sbjct: 248 TPST-PSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPST-PSTPSTPSTPS- 304
Query: 676 TTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
T S P T +T + STP+ PN
Sbjct: 305 TPSAPSTPSTPSTPSTPSTPKTPSTPCTPN 334
Score = 39.1 bits (87), Expect = 0.005
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS- 672
TP T P+ S S+P T + P T ST S+++ + T ST P TPS
Sbjct: 753 TPST-PSTPSTLSMP---STPSMPNTPSTPSTPSTPSTLSTPITPST-PSTPSTPSTPSM 807
Query: 673 -NTTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
+T T S P T +T C+ +TP MP+
Sbjct: 808 PSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPS 839
Score = 39.1 bits (87), Expect = 0.005
Identities = 32/90 (35%), Positives = 38/90 (42%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 675
TP T P+ S S P T S C P T ST S+ + T ST P TPS
Sbjct: 798 TPST-PSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPST-PSTPSTPSTPS- 854
Query: 676 TTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
T S P T +T + STP+ PN
Sbjct: 855 TPSAPSTPSTPSTPSTPSTPKTPSTPCTPN 884
Score = 37.9 bits (84), Expect = 0.011
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 481 KLHSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMT--VSSTVI 654
KL + + P+ S S P +T S C P T ST S+ T ST
Sbjct: 8 KLSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPS 67
Query: 655 APLTPSNTTGTLSPPCTKATSCSSSTP 735
AP TPS T S PCT +T + STP
Sbjct: 68 APSTPS----TPSTPCTPSTPSTPSTP 90
Score = 37.1 bits (82), Expect = 0.019
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVS--STVIAP--- 660
TP T A +P S P T S P T ST S+ + + T S ST AP
Sbjct: 122 TPSTPSAPSTP-STPSTPSTPSTPSTPSTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTP 180
Query: 661 LTPS--NTTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
+TPS +T T S P T++T + STP MP+
Sbjct: 181 ITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPS 217
Score = 34.7 bits (76), Expect = 0.10
Identities = 32/90 (35%), Positives = 39/90 (43%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 675
TP T P+ S S P T S S P T ST S+ + T S+ P TPS
Sbjct: 469 TPST-PSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPST----PSTPS- 522
Query: 676 TTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
GT S P T +T + STP MP+
Sbjct: 523 APGTPSTPSTPSTPSTPSTPSTPSTPSMPS 552
Score = 33.5 bits (73), Expect = 0.24
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = +1
Query: 496 TPKTKPARKSPG--SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVS--STVIAP- 660
TP T +P S P T S P T ST S+ + + T S ST AP
Sbjct: 669 TPSTPSLTHTPSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITPGTPSTPSTPSAPG 728
Query: 661 --LTPS--NTTGTLSPPCTKATSCSSSTPRVQQCYXMPN 765
+TPS +T T S P T++T + STP MP+
Sbjct: 729 TPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPS 767
Score = 32.3 bits (70), Expect = 0.55
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 556 TEFTSRSCPPRTNST*S--SITRKVLVMTVSSTVIAPLTPSN--TTGTLSPPCTKATSCS 723
T S C P T ST S S R + T P TPS T T S PCT +T +
Sbjct: 374 TSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPRTPSTPCTHSTPGT 433
Query: 724 SSTP 735
STP
Sbjct: 434 PSTP 437
>SB_9594| Best HMM Match : Extensin_2 (HMM E-Value=0.066)
Length = 361
Score = 34.7 bits (76), Expect = 0.10
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSC--PPRTNST*SSITRKVLVMTVSSTVIAP 660
HS +P P ++ PC T R C PP T S V T + P
Sbjct: 145 HSPPNTVRPCHSPPNTVRPCHSPPN-TVRPCHSPPNTVHPCHSPLTAVHPCHSPLTAVRP 203
Query: 661 L-TPSNTTGTLSPPCTKATSCSSSTPRVQQCYXMPNXGR 774
+P NT P T C S V+ C+ PN R
Sbjct: 204 CHSPPNTVRPCHSPPTAVHPCHSPLTAVRPCHSPPNTVR 242
Score = 31.9 bits (69), Expect = 0.73
Identities = 27/99 (27%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSC--PPRTNST*SSITRKVLVMTVSSTVIAP 660
HS P P ++ PC T R C PP S V T + P
Sbjct: 25 HSPPNTVHPCHSPPNTVRPCHSPPN-TVRPCHSPPTAVHPCHSPPTAVRPCHSPPTAVHP 83
Query: 661 L-TPSNTTGTLSPPCTKATSCSSSTPRVQQCYXMPNXGR 774
+P NT P T C S V C+ PN R
Sbjct: 84 CHSPPNTVRPCHSPLTAVHPCHSPPTAVHPCHSPPNTVR 122
Score = 31.9 bits (69), Expect = 0.73
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSC--PPRTNST*SSITRKVLVMTVSSTVIAP 660
HS +P P ++ PC + R C PP T S V + P
Sbjct: 115 HSPPNTVRPCHSPPTAVRPC-HSPPTAVRPCHSPPNTVRPCHSPPNTVRPCHSPPNTVRP 173
Query: 661 L-TPSNTTGTLSPPCTKATSCSSSTPRVQQCYXMPNXGR 774
+P NT P T C S V+ C+ PN R
Sbjct: 174 CHSPPNTVHPCHSPLTAVHPCHSPLTAVRPCHSPPNTVR 212
Score = 31.9 bits (69), Expect = 0.73
Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSC--PPRTNST*SSITRKVLVMTVSSTVIAP 660
HS P P ++ PC+ T R C PP T S + P
Sbjct: 245 HSPPNTVHPCHSPPNTVHPCFSPPN-TVRPCHSPPNTVRPCHSPPTAFRPCHSPPNTVRP 303
Query: 661 L-TPSNTTGTLSPPCTKATSCSSSTPRVQQCYXMPNXGRSXP 783
+P NT P T C S V+ C+ PN P
Sbjct: 304 CHSPPNTVRPCHSPPTAVRPCHSPPTAVRPCHSPPNTVHPLP 345
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 33.9 bits (74), Expect = 0.18
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
S++P + R S GSL P +T+ TSRS PR+ S + + ST P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRS-----RSRARTPSTPSTPSTPSTP 232
Query: 670 SN-TTGTLSPPCTKATSCSSSTPRVQQCYXMPNXGRS 777
S TT + + A + +T ++C + G++
Sbjct: 233 STITTSSRASSRGSARGGAKTTKTTKKCTTCKSRGQN 269
>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2147
Score = 32.3 bits (70), Expect = 0.55
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 493 VTPKTKPARKSP-GSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
VT T+ +R S S+ +T+ TS + R++ +S+T++ V+S +
Sbjct: 1168 VTSATQESRSSQVTSVTQESSSTQVTSATQESRSSQV-TSVTQESRSSQVTSVTQESRSS 1226
Query: 670 SNTTGTLSPPCTKATSCSSSTPRVQ 744
T+ T PP T+ATS + +P Q
Sbjct: 1227 QVTSATQEPPSTQATSVTQESPSTQ 1251
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 31.9 bits (69), Expect = 0.73
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLP-------PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV 651
VTP+T P + + S P P T +SRS R +T S+ + +T S
Sbjct: 1475 VTPRTTPDKPTSSSTPVTMETERPMESTAGLSSRSIMNRIGATKSTTSTSTSTLTSVSQT 1534
Query: 652 IAPLTPSNTTGTLSPPCTKATSC 720
+ TP+ +LSP + C
Sbjct: 1535 LPVFTPTPLPISLSPETSSTRVC 1557
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 31.5 bits (68), Expect = 0.96
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 490 SVTPKTKPARKSP-GSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLT 666
+ T TKP +P + P TT + P T +T + ++T A T
Sbjct: 57 ATTTPTKPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTT 116
Query: 667 PSNTTGTLSPPCTKATSCSSSTP 735
P+ T T P T T +++TP
Sbjct: 117 PTKPTTTTPPGTTTPTKPTTTTP 139
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +1
Query: 490 SVTPKTKPARKSP-GSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLT 666
+ T TKP +P + P TT + P +T + ++T A T
Sbjct: 99 ATTTPTKPTTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTT 158
Query: 667 PSNTTGTLSPPCTKATSCSSSTP 735
P+ T T P T T +++TP
Sbjct: 159 PTKPTTTTPPATTTPTKSTTTTP 181
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 487 HSVTPKTKPARKSPG-SLPPCWKTTEFT-SRSCPPRTNST*SSITRKVLVMTVSSTVIAP 660
H P P+++ P PP + + +R+ P T +T + ++T A
Sbjct: 13 HHQRPPLLPSQQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPATTTPTKPTNTTPPAT 72
Query: 661 LTPSNTTGTLSPPCTKATSCSSSTP 735
TP+ T T P T T+ +++TP
Sbjct: 73 TTPTKPTTTTPPATTTPTTPTTTTP 97
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/82 (23%), Positives = 30/82 (36%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
+ TP T P + P T + P +T + ++T A TP
Sbjct: 44 TTTPTTPTTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTP 103
Query: 670 SNTTGTLSPPCTKATSCSSSTP 735
+ T T P T T +++TP
Sbjct: 104 TKPTTTTPPATTTPTKPTTTTP 125
>SB_55330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 595 ST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSSTP 735
+T ++I ++++ + ST I + S+ + + SPP + +S S STP
Sbjct: 9 TTINTIIITIIIIIIISTTINTIIRSSPSSSSSPPSSSPSSSSRSTP 55
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 337 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 203
W + +F++ SI + A+L F F H+ AV+YS T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171
>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 565 TSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS--NTTGTLSPPCTKATSCSSSTPR 738
T++ PPR + + SS+ I+ +P ++ G+++PP +T S STPR
Sbjct: 157 TNKKTPPRRTNLLEAFRAAAGTPAGSSSSISLSSPGMRSSLGSIAPPSRTSTPRSRSTPR 216
Query: 739 VQQ 747
+Q
Sbjct: 217 SRQ 219
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +1
Query: 526 PGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 705
P ++P F+S S P T S + TR L + S N T T PP T
Sbjct: 6057 PTTIPTSIVLDSFSSMSTEPPTTSV--APTRLHLKQALDSFKGVGNNKGNKTSTTEPPVT 6114
Query: 706 KATSCSSSTP 735
T+ ++TP
Sbjct: 6115 TPTTAPTTTP 6124
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 216 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 383
Y + I K E+ KEK KG+ K R E GKR A +D E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 556 TEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSSTP 735
T +T+ P +T + T T ++T A T NTT T T + + +++TP
Sbjct: 101 TTYTATVTAPNATTTTPTATTTTTTTTTTTTPYATTTTPNTTTTTPNTTTTSPNATTTTP 160
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
+ TP + + P TT + + P T +T + T T ++ TP
Sbjct: 129 TTTPYATTTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTP 188
Query: 670 SNTTGTLSPPCTKATSCSSSTP 735
+ TT T + T T+ +++TP
Sbjct: 189 NTTTNTPNATTTTPTA-TTTTP 209
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 675
T T P+ K P + P TT F S P T T +++ T T TPS
Sbjct: 257 TTTTLPSTKQPTT--PQLTTTTFPSTKQPTTTQQTTATLPSTKQPTTTQQTTATLPTPST 314
Query: 676 TTGTLSP 696
T+SP
Sbjct: 315 KPTTVSP 321
>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 565 TSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS--NTTGTLSPPCTKATSCSSSTPR 738
T + PPR + + T SS+ I+ +P ++ G+L+PP +T S TPR
Sbjct: 132 TKKKTPPRRTNVLEAFTAAAGTPAGSSSSISLASPGMRSSLGSLTPPSRTSTPRSRLTPR 191
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVI----APLT 666
P TK PP K T + R CPP T T + + R+ +T + + PLT
Sbjct: 220 PLTKCTYYRKRRCPPLTKCTNYRKRRCPPLTRCT-NYLKRRCPPLTRCTYYLKRRCPPLT 278
Query: 667 P-SNTTGTLSPPCTKATS 717
+N PP TK T+
Sbjct: 279 KCTNYLKRRCPPLTKRTN 296
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
P TK PP K T + R CPP T T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
P TK PP K T + R CPP T T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
P TK PP K T + R CPP T T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
P TK PP K T + R CPP T T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSST 732
TT + PRT ST ++ + T +ST AP T + TG+ T TS ++T
Sbjct: 93 TTTSAPSTSTPRTGST-TTTSAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTTSVMTTT 151
Query: 733 P 735
P
Sbjct: 152 P 152
Score = 28.7 bits (61), Expect = 6.8
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRS---CPPRTNST*SSITRKVLVMTVSSTVIAPLT 666
TP+T + S P T+ T+R+ PRT ST + T VMT + + +
Sbjct: 102 TPRTGSTTTT--SAPSTSTTSNSTTRAPSTSTPRTGSTITLRTSTTSVMTTTPSTTSISR 159
Query: 667 PSNTTGTLSPPCTKATSCSSST 732
+TT T P + T+ + +T
Sbjct: 160 AGSTTTTSDPSTSNITTSTGTT 181
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 565 TSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKAT--SCSSSTPR 738
T S P TN+T +T + ++ + +S +P PS+ T T+AT S T R
Sbjct: 849 TEASTEPHTNATILPVTTEAMMGSETSGTTSPTVPSSAAPTEKSSDTEATVHMTESMTTR 908
Query: 739 V 741
V
Sbjct: 909 V 909
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 664 TPSNTTGTLSPPCTKATSCSSSTPRVQQC 750
TP+ T GT PC + T C + + Q C
Sbjct: 1063 TPTPTDGTTGEPCPQGTFCVTGSYEFQSC 1091
>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
Length = 435
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 426 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST-EDKQYL 602
+NK +H + D + IA+G + + ++ + PV E Y + T ED
Sbjct: 22 VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81
Query: 603 KLDNTKGSSDDRIIYGDSTAD 665
+D + D I+ + D
Sbjct: 82 AIDKVRSRDDYAFIWDSAVLD 102
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 398 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 577
DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617
Query: 578 VHR 586
+ +
Sbjct: 618 IEK 620
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITR-KVLVMTVSSTVIA-P 660
H + P ++ PP W + PP+ N+ S KV++ T+SS+ P
Sbjct: 391 HMIQPSQAKTIQTASKTPPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNP 450
Query: 661 LTPSNTTGTLS 693
+T S + T S
Sbjct: 451 VTTSTSVATTS 461
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 691 SPPCTKATSCSSSTPRVQQCY 753
SPPC+ CS++ PR QC+
Sbjct: 1594 SPPCSGQGECSNTNPRRCQCF 1614
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLT 666
+SV K P+R S P T + R+ S ++ + T+S T+ T
Sbjct: 85 NSVHSKPSPSRPSLNIAPSSTLTPSTAGHTIDIRSTDHVHSRAQEEQIPTLS-TLKTTAT 143
Query: 667 PSNTTGTLSPPCTKATSCSSSTP 735
++TT + PP + T+ +++TP
Sbjct: 144 STSTTKYIPPPPSPPTTTTTTTP 166
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 658 PLTPSNTTGTLSPPCTKATSCSSS 729
PL P NT +P CT ++ C S+
Sbjct: 288 PLPPKNTNRASTPSCTSSSECGSN 311
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 28.7 bits (61), Expect = 6.8
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITR-KVLVMTVSSTVIA-P 660
H + P ++ PP W + PP+ N+ S KV++ T+SS+ P
Sbjct: 371 HMIQPSQAKTIQTASKTPPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNP 430
Query: 661 LTPSNTTGTLS 693
+T S + T S
Sbjct: 431 VTTSTSVATTS 441
>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
Length = 905
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +1
Query: 565 TSRSCPPRTNST*S-SITRKVLVMTVSSTVIAP------LTPSNTTGTLSPPCTKATSCS 723
TS + P T + S S+T + +V+ TV++P ++PS T +SP T+
Sbjct: 24 TSVTASPSTGAVVSLSLTETIASPSVNETVVSPSATEAVVSPSATEVVMSPSATQIVVSP 83
Query: 724 SSTPRVQQ 747
S+T V Q
Sbjct: 84 SATETVAQ 91
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 607 SITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTK--ATSCSSSTPRVQQCYXMPN 765
S+TR +L T+ ++ + P NTT +P T+ ++ SSST V P+
Sbjct: 544 SLTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTPS 598
>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
Length = 360
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAP-LTPS 672
TPKT A K+P ++P TT S +T S+ + T T I P T
Sbjct: 240 TPKTTKAPKTPITIPKI--TTNRPQTSTITAKITTESTTATQATTKTKEYTTIKPSTTEE 297
Query: 673 NTTGTLSPPCTKATSCSSSTPRVQ 744
+TT S ++T+ + +T + +
Sbjct: 298 STTNEASTAEFESTTAAQATTKTE 321
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +1
Query: 496 TPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 675
TP A + S P W + T+ + + ++I V ++S+T A P+N
Sbjct: 287 TPIASNAITTVQSKSPTWTSNACTNTTGLIAVRTAATTIPASATVSSISTTASASTAPTN 346
Query: 676 TTGTLSPPCTKATSCSSSTPRVQ 744
+ + ATS +STP Q
Sbjct: 347 P--SFATTTVTATSICASTPVTQ 367
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 246 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 335
+ +E+ GE EA KRLI+ GK+ M Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 534 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 653
FT + E K MS E+KQ K DN KG S+ + GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 607 SITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTK-ATS-CSSSTPRV 741
S+TR +L T+ ++ + P NTT +P T+ ATS SSST V
Sbjct: 745 SLTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLATSTISSSTVNV 791
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 607 SITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTK-ATS-CSSSTPRV 741
S+TR +L T+ ++ + P NTT +P T+ ATS SSST V
Sbjct: 1147 SLTRSLLSTTLIPSISTSMLPYNTTVIATPNTTRLATSTISSSTVNV 1193
>SB_56432| Best HMM Match : ATP-synt_8 (HMM E-Value=5.3)
Length = 117
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 622 VLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSSTP 735
+L++ S+ P+ + +SPP + +S SSS+P
Sbjct: 65 ILIIITSNITTCPMGKERSAKVMSPPSSSFSSSSSSSP 102
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 499 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 600
P TK PP K T + R CPP T T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 435 RDHHALKLIDQQNHNK-IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLD 611
R HH+ + + K + SKD T+ VS + + E ++ M+T +K +K+
Sbjct: 418 RRHHSFGGLPLEYREKRLRESSSKDNTNTSVSLEIKKIREAQKLIDAAMATSEKS-IKVG 476
Query: 612 NTKGSSDDR 638
+KG D +
Sbjct: 477 ESKGLWDSK 485
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 565 TSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSS-TPRV 741
T R PP T++ + ++T TP+ T+G PP T A S++ PR
Sbjct: 560 TVRPTPPLTSTAAEPVVTPTTKGKTTTTGHPTKTPTTTSGPTHPPTTTARPTSTAPAPRK 619
Query: 742 QQ 747
Q
Sbjct: 620 AQ 621
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 610 ITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKATSCSSSTP 735
IT ++ SS+ I+P S+++ T+SP + +T+ ++S P
Sbjct: 141 ITSSSSSLSSSSSTISPTKLSSSSSTISPSQSSSTTAATSPP 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,842,409
Number of Sequences: 59808
Number of extensions: 494461
Number of successful extensions: 1953
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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