Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B18
         (996 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       40   5e-04
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        39   0.001
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    31   0.33 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    27   4.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   7.2  

>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +1

Query: 379 LTVLETCVKNCGKPFHVLVCNKEFISELVK 468
           L +L+ CVKNCG  F + + +KEF++ELV+
Sbjct: 66  LNLLDICVKNCGYAFRLQIASKEFLNELVR 95


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 379 LTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPGH 486
           L +L+ CVKNCG PFH  + ++EF++  V    P H
Sbjct: 65  LHLLDICVKNCGYPFHFQIASEEFLNGFVSRF-PNH 99


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 379 LTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
           L + +TCVKN G  F + + ++EF+  LV ++
Sbjct: 70  LKLTDTCVKNGGSGFLLEIASREFMDNLVSIL 101


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 228 HLK-NWALKHGKXCAXHXQQYGTDLKMPLKQ*EKRVDYKRWERNYTVV 368
           HLK N A+K GK C     + G +L  P K        + W R   ++
Sbjct: 438 HLKKNQAIKTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYRKGRII 485


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 476 PINFTNSDINSLLQTRTWNGFPQFFTHVSRTVSVYIHH 363
           P+  TN  + S+     W        H S+ +SVYIHH
Sbjct: 298 PLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHH 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,817
Number of Sequences: 5004
Number of extensions: 31337
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)