Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B18
         (996 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)                    58   1e-08
SB_53310| Best HMM Match : VHS (HMM E-Value=0)                         46   6e-05
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      42   6e-04

>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
          Length = 674

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +1

Query: 370 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGP 480
           + TLTVLE+C+KNCG  FHVLV  KEF+ E+ KL+ P
Sbjct: 51  LLTLTVLESCIKNCGHRFHVLVAKKEFLDEMTKLLSP 87


>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
          Length = 253

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +1

Query: 370 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
           M  LT+L  CV NCGK FH+ +C+++F+SE   ++
Sbjct: 94  MQALTLLSACVNNCGKVFHLEICSRDFVSEAKSIL 128


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 373 YTLTVLETCVKNCGKPFHVLVCNKEFISELVKLIGPG 483
           Y LTVLE C+KNCG   H  +  K+F+ E+  LI  G
Sbjct: 131 YALTVLEACMKNCGSIIHDEIATKDFMDEMRNLIKNG 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,182
Number of Sequences: 59808
Number of extensions: 222827
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2967383049
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)