Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B18
(996 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 38 0.008
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 37 0.024
At5g01760.1 68418.m00095 VHS domain-containing protein / GAT dom... 36 0.055
At5g16880.3 68418.m01977 VHS domain-containing protein / GAT dom... 34 0.17
At5g16880.2 68418.m01979 VHS domain-containing protein / GAT dom... 34 0.17
At5g16880.1 68418.m01978 VHS domain-containing protein / GAT dom... 34 0.17
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 33 0.22
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 33 0.30
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom... 32 0.68
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 29 6.4
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 29 6.4
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 38.3 bits (85), Expect = 0.008
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 370 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
+ LT+LET VKNCG H V K + E+VK++
Sbjct: 62 LLALTLLETLVKNCGDYLHHQVAEKNILGEMVKIV 96
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 313 SNKKKGLTTSAGKETTQW*MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKL 471
S KK LT+ K + LT+LET + NCG+ H+ V K+ + ++VK+
Sbjct: 41 SGIKKRLTSRTSKVQ----LLALTLLETIITNCGELIHMQVAEKDILHKMVKM 89
>At5g01760.1 68418.m00095 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 542
Score = 35.5 bits (78), Expect = 0.055
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 370 MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
+ TLT+LE +KNCG H + K + ++VKL+
Sbjct: 76 LLTLTLLEAMLKNCGDFVHSHIAEKHLLEDMVKLV 110
>At5g16880.3 68418.m01977 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 297
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 379 LTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
L +LETCVKNC K F V + + E+VKLI
Sbjct: 105 LVLLETCVKNCEKAFSE-VAAERVLDEMVKLI 135
>At5g16880.2 68418.m01979 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 379 LTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
L +LETCVKNC K F V + + E+VKLI
Sbjct: 105 LVLLETCVKNCEKAFSE-VAAERVLDEMVKLI 135
>At5g16880.1 68418.m01978 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 379 LTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
L +LETCVKNC K F V + + E+VKLI
Sbjct: 105 LVLLETCVKNCEKAFSE-VAAERVLDEMVKLI 135
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 385 VLETCVKNCGKPFHVLVCNKEFISELVKLI 474
+LET VKNCG H+ V K I E+V+++
Sbjct: 77 LLETIVKNCGDMVHMHVAEKGVIHEMVRIV 106
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 325 KGLTTSAGKETTQW*MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
K L G + ++ + L LET KNCG+ + L+ +++ + ++VK++
Sbjct: 44 KVLKKRLGSKNSKVQILALYALETLSKNCGESVYQLIVDRDILPDMVKIV 93
>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 446
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 325 KGLTTSAGKETTQW*MYTLTVLETCVKNCGKPFHVLVCNKEFISELVKLI 474
K L G + ++ + L LET KNCG+ + L+ ++ ++++VK++
Sbjct: 44 KVLKKRLGSKNSKVQILALYALETLSKNCGENVYQLIIDRGLLNDMVKIV 93
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 400 VKNCGKPFHVLVCNKEFISELVKLIGPG 483
VK K FH + ++ I ++ +L+GPG
Sbjct: 100 VKKLAKKFHAFLASESVIKQIPRLLGPG 127
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 391 ETCVKNCGKPFHVLVCNKE 447
ETCV NC KP H C +E
Sbjct: 1602 ETCVANCWKPPHFECCEEE 1620
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,367,222
Number of Sequences: 28952
Number of extensions: 164028
Number of successful extensions: 368
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2431362000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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