Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B17
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       31   0.98 
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    29   5.2  
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254...    29   6.9  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 638 PGRFPPGKLPXCAP-PVXXPCRFTRIPXPPFLPF 736
           P  +PP  +P C P P   P  F   P PPFLPF
Sbjct: 211 PWPWPP--IPFCTPRPWFPPIPFLTPPPPPFLPF 242


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 638 PGRFPPGKLPXCAPPVXXPCRFTRIPXPPFLP 733
           PG  PPG +P    P   P +   +P PP LP
Sbjct: 139 PGSMPPGSMP----PGSMPMQMAPLPRPPTLP 166


>06_01_0353 +
           2545995-2546208,2546362-2546492,2546846-2546929,
           2546972-2547316,2547327-2547582,2547683-2547879
          Length = 408

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 314 GERRVAYWALXPLPRLTDSLR---SGRSGCGERVSASLQGRNTVIH 442
           G RR+   +L PL  L  ++R    GRSGC ER++   +  N  ++
Sbjct: 264 GARRIGVTSLPPLGCLPATIRLYGKGRSGCVERLNGDAETFNNKLN 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,019,039
Number of Sequences: 37544
Number of extensions: 352716
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)