Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B17
         (928 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processi...    31   7.9  
BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.      31   7.9  
AK123353-1|BAC85591.1|  195|Homo sapiens DC3) mRNA.  protein.          31   7.9  

>BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processing
           factor 40 homolog B (S. cerevisiae) protein.
          Length = 871

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 650 PPGKLPXCAPPVXXPCRFTRIP--XPPFLP 733
           PPG LP   PP+  P   T+IP   PP +P
Sbjct: 35  PPGILPPMLPPMGAPPPLTQIPGMVPPMMP 64


>BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.
          Length = 788

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 650 PPGKLPXCAPPVXXPCRFTRIP--XPPFLP 733
           PPG LP   PP+  P   T+IP   PP +P
Sbjct: 35  PPGILPPMLPPMGAPPPLTQIPGMVPPMMP 64


>AK123353-1|BAC85591.1|  195|Homo sapiens DC3) mRNA.  protein.
          Length = 195

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 650 PPGKLPXCAPPVXXPCRFTRIP--XPPFLP 733
           PPG LP   PP+  P   T+IP   PP +P
Sbjct: 30  PPGILPPMLPPMGAPPPLTQIPGMVPPMMP 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,902,909
Number of Sequences: 237096
Number of extensions: 1928840
Number of successful extensions: 3876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3844
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)