Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B16
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    28   2.1  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   8.5  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 212 HSPKACFAYRQVRSLASFTS*LMFKHAAKKNAREEE 105
           HSP+A   Y QV S    +S  ++ +A + N+R++E
Sbjct: 4   HSPEASSTYAQVTSNDELSSNKIYMNADQNNSRKKE 39


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 314 NDYHSLGSLRK*ILHSSSSPGCTSIV-SYSRNKDPHSPKACFAYRQVRSLASFTS 153
           N   SL S    +L +SS      ++ S++ NK+P    +CF+    RS ++ TS
Sbjct: 383 NVIESLSSAMDAVLATSSLDDLAELIASFAGNKNPQIKSSCFSLFS-RSFSNMTS 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,357
Number of Sequences: 5004
Number of extensions: 35639
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)