Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B11
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   1.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   7.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   7.3  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 493 ICSEAKWTTLTSALRRMPLISSTVGR 570
           +  ++KW   ++ +  MPL++  +GR
Sbjct: 413 LAEDSKWRVRSAIIEYMPLLAGQLGR 438


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 514 TTLTSALRRMPLISSTVGRTNRL 582
           TT +SAL   PLI   +  +N L
Sbjct: 15  TTTSSALNSTPLIEFNISTSNYL 37


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 514 TTLTSALRRMPLISSTVGRTNRL 582
           TT +SAL   PLI   +  +N L
Sbjct: 15  TTTSSALNSTPLIEFNISTSNYL 37


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 357 PPLPQGFPLSLP 322
           PPLPQ  PL LP
Sbjct: 175 PPLPQVPPLPLP 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,953
Number of Sequences: 336
Number of extensions: 4225
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)