Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B11
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   4.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   6.1  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   8.1  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    26   8.1  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   8.1  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 472 TRSPEQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 627
           +++ E+   +  K+T   + L R   +   +GR + ++ T R+LS +TK  P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 677 TFRSTQVKQXKKIPRSMKKRSSRNRQCVSYSHCFTLKTXNWAQ 805
           T+ STQ     K   S +   S +    +YS+  TL+T   AQ
Sbjct: 241 TYESTQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQ 283


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 426 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSAPKNAADIINRWA 569
           T+  ++Y S  Y++ D  S+  +  R  + N+NF A KN +     WA
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA-KNYSS--KEWA 347


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -2

Query: 717 GIFXFCFT--CVERNVPVPLEENDV 649
           G+F  C T  CV RNVPV   +ND+
Sbjct: 528 GVFA-CKTAECVSRNVPVQFSQNDM 551


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 683 RSTQVKQXKKIPRSMKKRSSRNRQCVSYSH 772
           R  +V++ KKI   M+K S  NR+ V   H
Sbjct: 8   REARVEKLKKIREQMRKSSHENRKEVVQEH 37


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 484 EQRICSEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTPA 630
           +Q    E   T LT AL +   +   +GR   ++ T ++LS +TK  PA
Sbjct: 89  KQGAALEEYGTDLT-ALAKQGKLDPVIGREEEIQRTIQILSRRTKNNPA 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,726
Number of Sequences: 5004
Number of extensions: 70186
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)