Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B11
(880 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 45 9e-05
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 41 0.001
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 39 0.005
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27) 31 1.2
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 28 8.7
SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 44.8 bits (101), Expect = 9e-05
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +1
Query: 577 RLKDT*RLLSAKTKLTPATAVAMFNVIFFQGHWHVPFNASETEXKDSXFDEKTIIKKPTM 756
+ KD + L + T + + N ++F+G W FN + T+ I+ M
Sbjct: 140 KTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFM 199
Query: 757 RLLQSLFYTENEXLGAKMIELPYKEPXFRMVVVCPTKL 870
Y E+ LG +++ELPY MVV+ P ++
Sbjct: 200 YQSSEFRYLESSTLGCQIVELPYAGEKLSMVVLLPNEV 237
Score = 36.3 bits (80), Expect = 0.033
Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +3
Query: 411 DPKFLTVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFSAPKNAA-DIINRWADEQTQ 584
D + +AN+++ +++ + F + + F +E+ +++ N A D +NRW +++T+
Sbjct: 83 DGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTK 142
Query: 585 GHIKTPVSEDKIDPRHGRCNV*RHFLPGALARSVQRK*NRXKRF 716
IK + E + C V + G+ + R + +F
Sbjct: 143 DKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +1
Query: 631 TAVAMFNVIFFQGHWHVPFNASETEXKDSXFDEKTIIKKPTMRLLQSLFYTENEXLGAKM 810
T + + N I+F+G W PF + + ++ M Y ++ K+
Sbjct: 121 TRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKYLHSDKYKCKL 180
Query: 811 IELPYKEPXFRMVVVCP 861
+ELPY + MV+V P
Sbjct: 181 LELPYVDTQLSMVLVLP 197
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 39.1 bits (87), Expect = 0.005
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Frame = +3
Query: 303 GAGAQSKEEIREILGGGEAQ-ESTH-TYGLLNQRYAEFDPKF--LTVANKIYVSDQYKLA 470
G+ + +I I G E++ E TH T+ ++ D + + + NKI+ D++++
Sbjct: 11 GSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGHDEFEIL 70
Query: 471 DAFSR-TANLFRSEVDNINF-SAPKNAADIINRWADEQTQGHIK 596
+ F T + SE+ ++F + +A +N W +QT+G+IK
Sbjct: 71 EEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIK 114
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +1
Query: 631 TAVAMFNVIFFQGHWHVPFNASETEXK----DSXFDEKTIIKKPTMRLLQSLFYTENEXL 798
T + + N ++F+G W F T + K ++ T ++ + +Y + +
Sbjct: 126 TRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYY--DADI 183
Query: 799 GAKMIELPYKEPXFRMVVVCP 861
+++ELPY MV++ P
Sbjct: 184 KCRVVELPYSGDDTAMVIILP 204
>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
Length = 317
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 356 LPSPKDFPYLFLGLCTGSRLVTRKAAASRREETLSHSCRRLGC 228
+P+ D L LGLC S L+ A + + S CRR C
Sbjct: 231 IPATSDVMSLLLGLCFMSALLDAVATYGEKSDLRSFQCRRFCC 273
>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1298
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 336 PLSLPWTVHRLQT--RNKESSSITPRGDAITFLSS 238
PLS PW R QT K SSS TP G + + S
Sbjct: 950 PLSFPWIERRHQTAFHGKPSSSSTPDGPPVVYCPS 984
>SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 436 IKYTFPTSISWPTRSPEQRICSEAKWTTLTSALRRMPL 549
+ ++FP WP+ QR+ S W ++ + RR PL
Sbjct: 40 VYWSFPQLDPWPSVLAFQRVASHHSWPSVLACQRRGPL 77
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -3
Query: 599 SLYVSLSLFVRPTVDDIS--GILRSAEVNVVHFASEQIRCSGERVGQLILVGN 447
SLY L L + P +D S I +S ++ V++ E+I C+GERV +LV N
Sbjct: 538 SLYDGL-LKLFPECNDASELSIAQSGKLTVLNSMLEEIHCTGERV---VLVSN 586
>SB_5493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 320 QGRDKGNPWGRGGSRVNTHIRIIKSALRRIRP 415
QGR K N +G +R N +R + + RR+RP
Sbjct: 7 QGRTKENKGEQGRTRENKELREVHADSRRLRP 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,156,844
Number of Sequences: 59808
Number of extensions: 570211
Number of successful extensions: 2345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2341
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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