Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B11
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    38   0.012
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    35   0.062
At2g35580.1 68415.m04357 serpin family protein / serine protease...    35   0.062
At3g62770.2 68416.m07051 transport protein-related weak similari...    31   0.77 
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    30   2.3  
At1g64030.1 68414.m07252 serpin family protein / serine protease...    30   2.3  
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re...    29   3.1  
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   7.2  
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    28   7.2  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   9.5  
At2g37960.1 68415.m04659 expressed protein                             28   9.5  

>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 628 ATAVAMFNVIFFQGHWHVPFNASETEXKDSXFDEKTIIKKPTMRLLQSLFYTENEXLGAK 807
           ++ + + N ++F+G W   F+A+ T+  D    + T +K P M   +  +    +  G K
Sbjct: 99  SSTLVLANAVYFKGAWSSKFDANMTKKNDFHLLDGTSVKVPFMTNYEDQYLRSYD--GFK 156

Query: 808 MIELPYKEP--XFRMVVVCP 861
           ++ LPY E    F M +  P
Sbjct: 157 VLRLPYIEDQRQFSMYIYLP 176


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 649 NVIFFQGHWHVPFNASETEXKDSXFDEKTIIKKPTMRLLQSLFYTENEXLGAKMIELPYK 828
           N ++F+G W   F+A  T+  D    + T++K P M   +  +    +  G K++ LPY 
Sbjct: 171 NAVYFKGAWSKKFDAKLTKSYDFHLLDGTMVKVPFMTNYKKQYLEYYD--GFKVLRLPYV 228

Query: 829 EP--XFRMVVVCP 861
           E    F M +  P
Sbjct: 229 EDQRQFAMYIYLP 241



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 423 LTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFSA-PKNAADIINRWADEQTQGHIK 596
           L+ A  +++        +F     N + +  + ++F+  P    + +N WA+  T G IK
Sbjct: 92  LSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFATKPAEVINEVNAWAEVHTNGLIK 151

Query: 597 TPVSEDKI 620
             +S+D I
Sbjct: 152 EILSDDSI 159


>At2g35580.1 68415.m04357 serpin family protein / serine protease
           inhibitor family protein similar to protein zx [Hordeum
           vulgare subsp. vulgare] GI:19071, serpin [Triticum
           aestivum] GI:1885350; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 374

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = +1

Query: 598 LLSAKTKLTPATAVAMFNVIFFQGHWHVPFNASETEXKDSXFDEKTIIKKPTMRLLQSLF 777
           LL +  K  P T     N +FF G W   F+ S T+  D    + T ++ P M    S  
Sbjct: 153 LLPSNPKSAPLTDHIFANALFFNGRWDSQFDPSLTKDSDFHLLDGTKVRVPFM-TGASCR 211

Query: 778 YTENEXLGAKMIELPYK 828
           YT +   G K+I L Y+
Sbjct: 212 YT-HVYEGFKVINLQYR 227


>At3g62770.2 68416.m07051 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 432

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 499 SEAKWTTLTSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTPATAVAMFNVI--FFQGH 672
           S A+W  ++S    + +    V   +++KD+ R+    T  +P++++++F V+  +F   
Sbjct: 311 SNAQWLAVSSDKGTVHVFGLKVNSGSQVKDSSRIAPDATPSSPSSSLSLFKVLPRYFSSE 370

Query: 673 WHV 681
           W V
Sbjct: 371 WSV 373


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 722 SMKKRSSRNRQCVSYSHCFTLKTXNWAQ 805
           S+ +   RN +C++ SHC  LK  +W Q
Sbjct: 765 SVSQDCLRNIRCINISHCNKLKNVSWVQ 792


>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +1

Query: 619 LTPATAVAMFNVIFFQGHWHVPFNASETEXKDSXFDEKTIIKKPTMRLLQSLFYTENEXL 798
           +T  T     N + F+G W  PF    T   D      T +  P M   ++ +    +  
Sbjct: 160 VTSLTNKIYANALSFKGAWKRPFEKYYTRDNDFYLVNGTSVSVPFMSSYENQYVRAYD-- 217

Query: 799 GAKMIELPYK 828
           G K++ LPY+
Sbjct: 218 GFKVLRLPYQ 227


>At1g56440.1 68414.m06491 serine/threonine protein
           phosphatase-related similar to SP|Q60676
           Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
           (PP5) (Protein phosphatase T) (PPT) Mus musculus,
           Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
           sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
           Domain
          Length = 476

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 775 FYTENEXLGAKMIELPYKEPXFRMVVVCPT 864
           F+TE+  L  K IE   K P F M+V+C T
Sbjct: 408 FFTEDMDLAVKYIENLTKVPRFNMLVMCLT 437


>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor, Homo
           sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1793

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 309 GAQSKEEIREILGG----GEAQESTHTYGLLNQRYAEFDPKFLTVANKIYV 449
           G +  E IR  L G    GEAQ+         +RY + +PK  T A+  YV
Sbjct: 693 GMEFDEAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYV 743


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 634 PWRGSILSSLTGVFMCP*VC--SSAQRLMISAAFF 536
           PW+GS++ S+ GVF+   V   SS+   M  AA F
Sbjct: 560 PWKGSVVDSVVGVFLTQNVADHSSSSAYMDLAAEF 594


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 226 LQPSRRQECDSVSSRRDAAAFLVTSLEPVHSPRKR*GKSLGEGRLKSQ 369
           LQ S R+E D V   + AA   VTSLE ++   +    SL +   K Q
Sbjct: 190 LQVSLREELDKVKEEKMAAKQKVTSLEDMYKRLQEYNTSLQQYNTKLQ 237


>At2g37960.1 68415.m04659 expressed protein
          Length = 480

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 444 YVSDQYKLADAFSRTANLFRSEVDNINFSAP 536
           ++ D+Y   + FS+T +LFRSE  ++  ++P
Sbjct: 26  FLVDRYLCDNRFSKTRSLFRSEASSLISNSP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,742,849
Number of Sequences: 28952
Number of extensions: 387921
Number of successful extensions: 1136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)