Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B10
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   6.5  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   8.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   8.6  

>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 KEASENTNHFDPSGAFEKDWSR 307
           KE       FDP G++E++W R
Sbjct: 119 KEGKGEIYSFDPVGSYEREWCR 140


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 318 FHEFRDQSFSNAPDGSKWLVFSDASFLVRCLPTR 217
           +H   D+SF +  D  +W    D  F + C  T+
Sbjct: 199 YHRLLDRSFVDDNDHLRWCPAPDCEFAIECHVTQ 232


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 233 RTKKEASENTNHFDPSGAFEKDWSR 307
           R +KE    TNH +   A+ K W+R
Sbjct: 96  RLRKECISQTNHEEQLAAYAKYWTR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,913
Number of Sequences: 5004
Number of extensions: 50644
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)