Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B10
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 283 PGRIEVVGVFRRFF--LGALLT 224
           P RI   G+FRRF+  LG L T
Sbjct: 544 PSRISKQGLFRRFYNLLGKLST 565


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 273 SKWLVFSDASFLVRCLPTR 217
           SKWL  + ++  +RCL  R
Sbjct: 71  SKWLSINHSACAIRCLAQR 89


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 212 GPRVGKQRTKKEASENTNHFDPSGAFEK 295
           GPR GK++ K    EN +  + + +  K
Sbjct: 210 GPRNGKRKRKSSTIENESETESNASSTK 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,197
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)