Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B10
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit...    29   4.3  
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P...    28   10.0 

>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
           family protein similar to SP|P39007 Oligosaccharyl
           transferase STT3 subunit {Saccharomyces cerevisiae};
           contains Pfam profile PF02516: Oligosaccharyl
           transferase STT3 subunit
          Length = 779

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 177 YYNFDHDKHIFTGHGWVSSAPRKKRLKTPTTSIRPGHSRKIGHETHETLS 326
           ++   H + +FT H W+    R  +LK P   IR G ++K+  +T   LS
Sbjct: 724 HFKLTHFEEVFTSHHWM---VRLYKLKPPRNRIR-GKAKKLKSKTSSGLS 769


>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1172

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 198 KHIFTGHGWVSSAPRKKRLKTPT---TSIRPGHSRKIGHETHE 317
           K  F+   +VSS+ RKK L+ PT    S  P HS  +  E +E
Sbjct: 294 KPAFSFVPFVSSSKRKKSLEVPTQSQASENPSHSHTMSDEQNE 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,392
Number of Sequences: 28952
Number of extensions: 273274
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)