Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B09
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    28   2.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   7.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.9  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   7.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   7.9  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 189 TVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 350
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 667 QECVSHFLCRYIH-SVFTTQSVSNVLSASFLTFTIQSVSSFTKQA-SHLFCS 518
           Q    HF   Y + S    +S +  +S++F+T   + VSS T QA SH + +
Sbjct: 377 QMVAKHFSKNYANQSGIVQRSFAECISSTFITKAFKLVSSNTLQAMSHFYAT 428


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 640 RYIHSVFTTQSVSNVLSASFLTFTIQSVSSFTK 542
           R + S+     +SN+ + +FL   I   SSFTK
Sbjct: 4   RLLFSLICVFCISNIFTQAFLVHQIYGNSSFTK 36


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 44  LSHNX-NCVSVYNMALYSWLLFAAFL 118
           +SHN  N +  Y M+L+   LFAAF+
Sbjct: 339 MSHNLINTIIDYGMSLFHLFLFAAFI 364


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 515 HIWLSLSSFQSFHLNSKFPVGSFFPICKXKV*GLSFAGFG 396
           HIWL +     F+ NSK    +F P     V G S   FG
Sbjct: 241 HIWL-IKERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFG 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,094
Number of Sequences: 5004
Number of extensions: 52451
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)