Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B09
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w...    31   1.3  
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    28   6.9  
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof...    28   6.9  

>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
           similarity to cell cycle checkpoint protein RAD17 [Homo
           sapiens] GI:4102916
          Length = 599

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/117 (21%), Positives = 47/117 (40%)
 Frame = +3

Query: 96  GCYSLHFSAVV*AEFNVVTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFD 275
           G   + F+ +       V  R+CRE     C V  + ID    +    ++    +   F 
Sbjct: 281 GALKVAFNPITKNSIKKVLQRICRE---EHCKVTTMEIDQMATASGGDIRHAITSLQLFS 337

Query: 276 FTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFXFAYWK 446
             P+ + TK+K+   G+++        +Y+     ++SC    G+ +TL    A  K
Sbjct: 338 VKPELNHTKIKSPRPGMEDNYHGNEQTMYSGLDSGISSC---FGRDETLSLFHALGK 391


>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 264 VSFDFTPQFSTTKLKTGLFGLKNGAEIPFDAL 359
           VSF+    F+T  LK G +   +G  +PFD +
Sbjct: 199 VSFEEVDDFTTADLKIGFYAGDHGDGLPFDGV 230


>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 301

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 333 GAEIPFDALYNADACTLTSCPTE 401
           G EI F+ +YN D  T T  PTE
Sbjct: 241 GREIRFEEVYNEDVQTRTKAPTE 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,266
Number of Sequences: 28952
Number of extensions: 278188
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)