Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B08
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    31   0.16 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    29   0.85 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   2.6  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   7.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   7.9  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 198 VLPNVNSTI-YHDVPAIINLVDYV----NVGAYDYYTPTRNNKEADYTAPIYTPQNRN 356
           ++  + ST+ YHD+   IN+V  V     +G Y+YY  T+ NK+       Y   N N
Sbjct: 316 IITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITKGNKKEAEKEVEYIVLNEN 373


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 285 YYTPTRNNKEADYTAPIYTPQNRNPLQNADAA 380
           Y TPT       Y  P YTP  RNP Q+   A
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVA 621


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 SYPEVCGKLINPNQQKGMRPHLRKVTDPSKRF 647
           +Y  VCGK  +P+Q+K +R   R++  P ++F
Sbjct: 417 AYAAVCGKTRSPHQKKPLRVEFRQLR-PMQQF 447


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 718 ILLARKLLTSSXRISVVSLLWTYHWMTSXGLC 813
           ++L R   TS  R S+ S  +T+H++   G+C
Sbjct: 31  LILKRLSPTSEKRASIESGDYTFHYLIDNGIC 62


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 861 LETVFXGXKDWILVSGTETXGSHPMIGP 778
           L   F G +D+ L+ GT+     P IGP
Sbjct: 358 LNLTFDGFQDYCLMCGTDFTSRIPKIGP 385


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 862 FRDGIXRP*GLDTCLRYRDPRKSSNDRSTIATPP 761
           ++D + R  G DTCLRY          +TI  PP
Sbjct: 32  YKDFVRRDDG-DTCLRYTTIYSQGEYETTITIPP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,530,468
Number of Sequences: 5004
Number of extensions: 75263
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)