Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B08
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 60 3e-09
11_04_0234 + 15187065-15188241,15188316-15188494 47 2e-05
01_06_0386 - 28917678-28918112 30 2.1
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 30 2.7
12_02_0431 - 19000267-19000719 29 6.3
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 29 6.3
01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900 29 6.3
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 59.7 bits (138), Expect = 3e-09
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 1/190 (0%)
Frame = +3
Query: 255 VDYVNVGAYDYYTPTRNNKEAD-YTAPIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLS 431
+D+VNV A+ P N A + AP+Y +R +A V WL +G P+ K+V+
Sbjct: 225 LDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMG 281
Query: 432 IATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRP 611
I +GR+W L + P+ GP + G G +SY EV + + +G R
Sbjct: 282 IPLYGRSWFLRNKANSGVGAPVVAAGPKQRGS--NATGAMSYAEV--QWLAATATRGSRA 337
Query: 612 HLRKVTDPSKRFGTYAFRLPDDNGXGGIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSL 791
+ + S +Y G +WV+++ +K A+ L G + ++
Sbjct: 338 VITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNY 388
Query: 792 DDFRGSLYRR 821
DD ++ RR
Sbjct: 389 DDANLTVSRR 398
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 47.2 bits (107), Expect = 2e-05
Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 1/204 (0%)
Frame = +3
Query: 213 NSTIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYW 392
++ + + + + + +D+VN+ + + +N+ AP+Y +++ +A V W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLH---KNSNVTTADAPLY---DKDSHFSASYGVISW 267
Query: 393 LTSGAPSQKIVLSIATFGRTWKL-DADSEIAGVPPIHTDGPGEAGPYVKTEGLLSYPEVC 569
L +G P K+V+ I FGR+W L + D G P T G G+++Y E+
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP---TAAAGTKQRKSNQIGVIAYAEI- 323
Query: 570 GKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGXGGIWVSYEDPDTAGQKAAYVK 749
++ ++ VT ++ Y + G +WVS++ +K +V
Sbjct: 324 --------EEYLKSQSVFVTHDNQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVA 368
Query: 750 SKNLGGVAIVDLSLDDFRGSLYRR 821
L G + +S DD +L ++
Sbjct: 369 KSQLLGYFLSTISFDDSNYTLSKQ 392
>01_06_0386 - 28917678-28918112
Length = 144
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -1
Query: 694 MPPSPLSSGRRKAYVPKR--LLGSVTFLR*GRIPFCWLGLINLPQTSG*LSKPSVLTYGP 521
+PPS L+S ++ ++P R L+ + + ++ C LGLI P + S LT G
Sbjct: 35 IPPSALASPMQRIWIPTRTPLIDTDWY----KVVVCSLGLITKPSGNSVDSTACTLTSGA 90
Query: 520 ASPGPSVWIGGTPAISLSASSFQV 449
+S V + G S + F +
Sbjct: 91 SSSKSPVVLPGIAHFGASNAGFDI 114
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 790 NDRSTIATPPRFXDLT*AAFWPAVSGSSYDTQMPPSPLSSGRRKA 656
+D + T P L A A GS T PPSP GRR++
Sbjct: 537 SDNGGMMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>12_02_0431 - 19000267-19000719
Length = 150
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 309 CCCVSECNNRKRQR 268
CCCVS C R+R+R
Sbjct: 96 CCCVSACGGRRRRR 109
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 287 LHSDTQQQRS*LHSSYLHPTKSQPTAERRRRCHILA 394
LHS+ ++R L+SS HP S P + R H LA
Sbjct: 88 LHSEPSRRRLLLYSSSGHPIASSPWPPQLPRLHSLA 123
>01_05_0226 + 19506090-19506187,19506668-19506763,19507780-19507900
Length = 104
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 708 RMIPKCHXHRCHQEDGRRMFRNA 640
+M +CH H H DGR + R A
Sbjct: 35 KMKTRCHDHELHDADGRSILRKA 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,171,470
Number of Sequences: 37544
Number of extensions: 546865
Number of successful extensions: 1465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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