Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B07
         (1116 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.9  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      24   8.0  

>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -2

Query: 422  TPPPPPXXXXPFFFFXXXXATGFPKFCXXGXPXTXXPP 309
            TPPPPP    P F      +  F KF     P T   P
Sbjct: 1922 TPPPPPPTPLPEFITQFKGSLWFEKFYPDAQPDTFPKP 1959


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 23.8 bits (49), Expect(2) = 8.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -1

Query: 867 PPPPPPGXXKXXFFFXXXXPP 805
           PPPPPP      F      PP
Sbjct: 282 PPPPPPSNTPGMFASSGFQPP 302



 Score = 23.4 bits (48), Expect(2) = 8.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 735 PPXXXFFXPPPPP 697
           PP    F PPPPP
Sbjct: 303 PPPPTDFAPPPPP 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,249,928
Number of Sequences: 59808
Number of extensions: 335119
Number of successful extensions: 1327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3414929184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)