Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B07
         (1116 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    32   0.64 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   7.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   7.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   7.9  

>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 32.3 bits (70), Expect = 0.64
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +3

Query: 699 GGGGGXKXXXGGXXXKXPXXXGXKKKKXXPPPPPXXGXXXXKKKK 833
           GGGGG            P   G       PPPPP  G    +KK+
Sbjct: 27  GGGGGCAPAAPACAPPPPPMCGCAPPPPPPPPPPMCGCGCGRKKR 71


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = -1

Query: 864 PPPPPGXXKXXFFFXXXXPPXXGGGGVXXFFFFXXXXXXXXXXPPXXXFFXPPPPPXG 691
           PPPPPG            PP    GG+                PP      PPPPP G
Sbjct: 713 PPPPPGLPP----ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = -1

Query: 864 PPPPPGXXKXXFFFXXXXPPXXGGGGVXXFFFFXXXXXXXXXXPPXXXFFXPPPPPXG 691
           PPPPPG            PP    GG+                PP      PPPPP G
Sbjct: 713 PPPPPGLPP----ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = -1

Query: 864 PPPPPGXXKXXFFFXXXXPPXXGGGGVXXFFFFXXXXXXXXXXPPXXXFFXPPPPPXG 691
           PPPPPG            PP    GG+                PP      PPPPP G
Sbjct: 296 PPPPPGLPP----ITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,585,528
Number of Sequences: 27780
Number of extensions: 340204
Number of successful extensions: 1768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3005123904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)