Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B07
         (1116 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family...    34   0.20 
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    31   1.4  
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family...    30   2.4  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    29   7.3  
At1g61080.1 68414.m06877 proline-rich family protein                   28   9.7  

>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 147

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = -1

Query: 867 PPPPPPGXXKXXFFFXXXXPPXXGGGGVXXFFFFXXXXXXXXXXPPXXXFFXPPPPP 697
           PPPPPP        +    PP    GGV     +          PP    +  PPPP
Sbjct: 51  PPPPPPSSSGGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPPP 107



 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/57 (26%), Positives = 20/57 (35%)
 Frame = -2

Query: 869 PXPPPPXGXXKXFFFFXXXXPPXXGGGGXXFFFFXXXXXGXFXXXPPXXXFXPPPPP 699
           P PPPP        ++    PP   GG      +     G +   P    +  PPPP
Sbjct: 51  PPPPPPSSSGGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPPP 107


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/57 (26%), Positives = 20/57 (35%)
 Frame = -1

Query: 867 PPPPPPGXXKXXFFFXXXXPPXXGGGGVXXFFFFXXXXXXXXXXPPXXXFFXPPPPP 697
           PPPPPP      + +    PP         + +           PP   +  PPPPP
Sbjct: 396 PPPPPPPPPPPPYVYPSPPPPPP---SPPPYVYPPPPPPYVYPPPPSPPYVYPPPPP 449


>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 561

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -2

Query: 425 WTPPPPPXXXXPFFFFXXXXATGFPKFCXXGXPXTXXPPEXENXY 291
           ++PPPPP    PFF        G  K      P    PP  E  Y
Sbjct: 363 YSPPPPPPPPPPFFQGLFSSKKGKSKKNNSNPPPPPPPPPPERRY 407


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 767 KKKKXXTPPPPXXGGXXXXKKKXXFXXPGGGGGG 868
           K+++   PPPP   G     K       GGGGGG
Sbjct: 39  KQQRPPPPPPPPSTGDTVPLKTDGGEGGGGGGGG 72


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = -1

Query: 867 PPPPPPGXXKXXFFFXXXXPPXXGGGGVXXFFFFXXXXXXXXXXPPXXXFFXPPPPP 697
           PPPPPP       F     PP      V     F           P      PPPPP
Sbjct: 459 PPPPPPAVMPLKHFAPPPPPPLP--PAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPP 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,761,051
Number of Sequences: 28952
Number of extensions: 353857
Number of successful extensions: 2612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2802287344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)