Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B05
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   3.6  
U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog (hedg...    29   4.7  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    28   8.2  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 386 YILKLTSRLNNTSIYGSRFKDHFPIAVAEPRTSIAGPALTIP 261
           ++L L+  L   S Y    K HFP       TS+ GPA+ IP
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 8 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = +3

Query: 801 FFFFFSXGXXGGGGXXXFXXXXKKT-PPPPPXXKXPFXFFXP 923
           FF     G  GGGG   F        PPPPP    P  F  P
Sbjct: 206 FFLNGGLGGTGGGGNNGFFVPVPVVIPPPPPPPPGPNCFTNP 247


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 925 GGXKKXXGXFXXGGGGGVFFXXXXKXXXPPPPXXPXE 815
           GG     G    GGGGG  +        PPPP  P +
Sbjct: 38  GGGGGCGGGCGYGGGGGCGYGGGYGCGIPPPPPPPPQ 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,494
Number of Sequences: 27780
Number of extensions: 264910
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)