Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B04
         (918 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   7.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   7.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 442  LSGVTXXDVLVDSGCGGDRIVKRQNL 365
            L G+   D   DSG G DRI +R+ +
Sbjct: 1393 LQGIDDGDYENDSGSGPDRIGRRKTI 1418


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 442  LSGVTXXDVLVDSGCGGDRIVKRQNL 365
            L G+   D   DSG G DRI +R+ +
Sbjct: 1393 LQGIDDGDYENDSGSGPDRIGRRKTI 1418


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 442  LSGVTXXDVLVDSGCGGDRIVKRQNL 365
            L G+   D   DSG G DRI +R+ +
Sbjct: 1393 LQGIDDGDYENDSGSGPDRIGRRKTI 1418


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 442  LSGVTXXDVLVDSGCGGDRIVKRQNL 365
            L G+   D   DSG G DRI +R+ +
Sbjct: 1393 LQGIDDGDYENDSGSGPDRIGRRKTI 1418


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 37  RLLYEFSKRLSGQDQL 84
           +L+ EF+KRL G D+L
Sbjct: 367 QLIVEFAKRLPGFDKL 382


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 557 VGGWSYGNGVL 525
           +GGW+ GN +L
Sbjct: 102 IGGWNAGNAIL 112


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 557 VGGWSYGNGVL 525
           +GGW+ GN +L
Sbjct: 102 IGGWNAGNAIL 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,431
Number of Sequences: 336
Number of extensions: 2713
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)