Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B04
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    29   3.9  
09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548     28   9.0  

>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 115 SVGVDSLYPHFPSXATDETLQEIYQVATLHPHKCFNXQISTLL 243
           S+  ++L  H P+ ++  T   +++ A  H H  F+  I++LL
Sbjct: 91  SLTYNTLLNHLPASSSSSTTFRLFRFAMRHAHAAFHPNIASLL 133


>09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548
          Length = 487

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 10  FXNRQPXLXRLLYEFS--KRLSGQDQL*NGQPLRHVRSVGVDSLYPHFPSXATDETLQEI 183
           F NR P L  L+  F+  +R      L +  PLR +R + V  + P +    T   L+  
Sbjct: 339 FLNRLPDLDTLVLRFTGPERWVAPAMLHDDAPLRRLRRLLVADMPPSWDLTWTRYLLEAA 398

Query: 184 YQVATLHPH 210
             + TLH H
Sbjct: 399 AALETLHIH 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,282
Number of Sequences: 37544
Number of extensions: 328837
Number of successful extensions: 639
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)