Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B04
         (918 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   5.4  
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  

>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 25.0 bits (52), Expect(2) = 5.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 21  SAXTXKVIVRILQAT*RSGSIMKRTATSSCPVC 119
           S    K  V+ L A   +   +K  +TSSCP+C
Sbjct: 33  SPPASKEAVQALPAVEVTDKHLKELSTSSCPIC 65



 Score = 22.6 bits (46), Expect(2) = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 99  TSSCPVCRRGL 131
           T+SCPVCR  L
Sbjct: 96  TNSCPVCRHEL 106


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +1

Query: 196 TLHPHKCFNXQISTLLRDQKETAVGXLEKSSALFVDERMIVQKNXXGXAENWCLWG 363
           T+HP    +   + ++ D     +   +K     V  R ++ K   G  + WC WG
Sbjct: 610 TIHPVCAISHGDTFIVSDYGNDVIHVFDKQEGA-VTRRCVIGKQGSGDGDLWCPWG 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,619,752
Number of Sequences: 59808
Number of extensions: 360567
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)