Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B03
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 32 0.70
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 1.6
03_05_0373 + 23581812-23583293 30 2.1
06_03_1363 - 29576265-29577575 29 4.9
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 29 4.9
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604... 29 6.5
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 29 6.5
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 28 8.6
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +1
Query: 520 VQESQKLAKKVSSNVQETNEKLAPK---IKAAYDDFAKNTQEVIKKIQEAANAKQ*ASI 687
+QES++ +K++ Q+ E+L + I+ A+DD KN++ ++ + QE AKQ ASI
Sbjct: 784 LQESRETIQKLAQFGQQQQEELLSRQEQIRHAHDDLMKNSESIL-EAQEEFRAKQ-ASI 840
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 490 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 636
EKLQ + + QE+Q+L KK+SS V E +++ ++ + + A+ E
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQQEAE 200
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 464 DVQGGPCGAPRPCARCSASTVPKPPW 387
D GG A +RCSAST PK PW
Sbjct: 53 DGAGGYGSAASSPSRCSASTPPKSPW 78
>06_03_1363 - 29576265-29577575
Length = 436
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 521 TVFCTAACSFSPEGGGVLLDVQGGPCGAPRPCARCSASTVPKPP 390
TV AC +P GG VL+ V P P P AR + P PP
Sbjct: 367 TVAGGKACVVAPGGGKVLI-VDVTPPPPPPPAARRESWAAPPPP 409
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +1
Query: 490 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAA 663
E+L+A +Q T +++ + AKK + + NE+L K + A + + Q+ +++++E A
Sbjct: 970 EQLKALLQ-TERQATETAKKEYAEAERRNEELIKKFEGA-EKKIEQLQDTVQRLEEKA 1025
>03_02_0161 +
6046949-6047063,6048759-6048844,6049029-6049094,
6049408-6049860,6049960-6050115,6050319-6050465,
6050570-6050641,6050730-6051293
Length = 552
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 496 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ 675
LQ +Q +++ +A+K + + N+KL K+KA DD + ++ A +KQ
Sbjct: 340 LQGEIQR-LRDKIAMAEKSAKAEAQLNDKLRRKLKALEDDMRNESSNTSASNKDNATSKQ 398
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/61 (34%), Positives = 25/61 (40%)
Frame = -1
Query: 533 WDSCTVFCTAACSFSPEGGGVLLDVQGGPCGAPRPCARCSASTVPKPPWPCRSRLRALPG 354
W S + TAA +P G QGG A RP P+PP P LR PG
Sbjct: 63 WGSSSSAATAA---APGGASTAAAAQGGGSAASRPPRPPRPPLPPRPPRPPLPPLRE-PG 118
Query: 353 D 351
+
Sbjct: 119 E 119
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 502 AAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 651
A TVQ + L +K+ SN+ + E+L + K + D+ + EVI+KI
Sbjct: 69 AFFSKTVQGAVDLIEKMVSNMGWSKERLQTRQKPSVDEQFAHFVEVIQKI 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,648,438
Number of Sequences: 37544
Number of extensions: 312338
Number of successful extensions: 1402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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