Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_B03
(881 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) 30 2.2
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20) 29 5.0
SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 6.6
SB_2197| Best HMM Match : Uso1_p115_C (HMM E-Value=7) 29 6.6
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 8.7
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34) 28 8.7
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 8.7
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 8.7
>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
Length = 503
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 305 DGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK 448
+G+E+ + QL +SLQ L DA +++ L++S +E ++ K
Sbjct: 420 EGTETAIHQLKKENESLQTRLSDAQALSQKQLKESSSRLEEMHQQHNK 467
>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
Length = 2232
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 437 PRPCARCSASTVPKPPWPCRSRLRALPGD 351
P+ RC +S PW C S + AL GD
Sbjct: 821 PKRIPRCESSETRHWPWSCASGIAALVGD 849
>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 167 DGATRRSRLLQGHRTPHQGSSIRL*XQQFNSLTKSKDA-QDFSKAWKDGSESVLQQLNAF 343
D + R+ GH H G R+ + N T ++ QDF ++ + S + N
Sbjct: 238 DSESGLERMAIGH---HIGDRGRVVERSLNRRTNEEERKQDFINMDENDAPSFDNEWNHR 294
Query: 344 AKSLQGALGDANGKAKEALEQSRQNIER 427
++ +LGD + ALE+ R+ +R
Sbjct: 295 TRTAMHSLGDVRKDTRRALEEPRKRHDR 322
>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1444
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/81 (23%), Positives = 29/81 (35%)
Frame = +1
Query: 430 GRGAPQXXXXXXXXXXXXXXEKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAY 609
G G P + L+ V E + K + E N +L + AY
Sbjct: 624 GPGGPSLILQQQVKDLQQENKHLRQTVHRLNVELSRYQAKYRPVLFEVNTRLLAPLFLAY 683
Query: 610 DDFAKNTQEVIKKIQEAANAK 672
DD K +E+IK + +K
Sbjct: 684 DDRLKEKEEIIKTYDRLSKSK 704
>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 352
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -1
Query: 518 VFCTAACSFSPEGGGVLLDVQGGPCGAPRPCARCSASTVPKPPWP 384
+F A C +G + L +G CG P P C T PK P
Sbjct: 203 LFLVAKCKAKKDGRRLKLKYRGA-CGNPTPRKSCPPRTCPKQDKP 246
>SB_2197| Best HMM Match : Uso1_p115_C (HMM E-Value=7)
Length = 272
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/48 (22%), Positives = 27/48 (56%)
Frame = -1
Query: 239 KVLWNXLGVVFDVLEEVGSVASHHRSLGQSDAGEENYELGGHDVLSRD 96
K++ + + +FD +E+ + ++ + ++ + E E+GG + L RD
Sbjct: 115 KIIADQVRTIFDETKEINASSNKPTATTENTSNESEQEVGGSNALPRD 162
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 434 RPCARCSASTVPKPPWPCRSRLRALPGD 351
+ C C P PP PC+ R+ LP D
Sbjct: 121 KSCFSCRRRQQPPPPPPCQQRMADLPVD 148
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 83 SSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGSSIR 235
S + S S H + RS R P+ + RRSR Q R+P + S R
Sbjct: 214 SRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPR 264
>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
Length = 337
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 299 WKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSR 412
++D SES ++N F +G+ D +G K + +SR
Sbjct: 183 YEDNSESNKDEINVFESLREGSTIDESGSEKSSFSESR 220
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 148 MQAKRTTNLAAMMYCRETECGGDANRTATQRSVCQILK 35
M+ + T +MM R ECG A+ S CQ++K
Sbjct: 100 MEVEACTESRSMMVARRGECGPCASLRCKSPSRCQVIK 137
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 490 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 651
E+ ++ + +Q+ +K K+ S Q+T APK K A TQ KI
Sbjct: 342 EEYKSLQRQAMQDLKKQLKQTSEAQQQTETNSAPKAKPAKPSVPSPTQTAPNKI 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,753
Number of Sequences: 59808
Number of extensions: 329450
Number of successful extensions: 1163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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