Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B02
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           56   5e-08
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      29   4.7  
SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)                 29   6.2  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
 Frame = +1

Query: 136 NAAKTTYKICVPSQHLKACQXIVDIPTK-----SKVTLDCIPARDRMECLNYVQQRQADF 300
           NA K     C+    ++ CQ +  + ++       V L C+      +C++ +Q+ +AD 
Sbjct: 22  NAPKLGRWCCISDAEVEKCQALAHVASRVVTSNETVNLTCVRGDGVTDCMSRIQRDEADL 81

Query: 301 VPVXPEDMYVAAKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVIHKDLPINNLDQLKGLKS 480
           V +  ED+Y+A        VV ++Y +    D    Y AV ++     + N+  LKG  +
Sbjct: 82  VTLGEEDIYIAGAKYGLRPVVAEDYGS---KDKHIHY-AVALVRSTTTV-NITTLKGAIT 136

Query: 481 CHTGVNRNVGYKIPLXMLM 537
           CH      +G+KIP+  L+
Sbjct: 137 CHPRAEDMIGWKIPVGFLI 155


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -1

Query: 391 VLHRFCTPGKRRS-PDWVFWRPRTCLRXQ-LERNRLASAERNSDTPFYL--WRE 242
           +LH  CTPG+RRS   + +  P   +R + L  N     +R S T  +L  W E
Sbjct: 163 LLHNTCTPGQRRSEKKYYYTTPARLVREEVLLHNTCTPGQRRSITTQHLHAWSE 216



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 391 VLHRFCTPGKRRSPDWVFWRPRTCL 317
           +LH  CTPG+RRS    ++    CL
Sbjct: 628 LLHNTCTPGQRRSEKKYYYTTLACL 652



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 391 VLHRFCTPGKRRSPDWVFWRPRTCLRXQLERNRLASAE 278
           +LH+ C PG+RRS    ++    CL  + +R  + + +
Sbjct: 678 LLHKTCMPGQRRSEKKYYYTTPACLVREDQRRSIITQQ 715


>SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)
          Length = 211

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 385 EEPDAPFRYEAVIVIHKDLPINNLDQLKGLKSCHTGVNRNVGYKIPLXMLMKR 543
           E+P+ PFRY    ++HK + +    +L      H  + +  G+  P+  L  R
Sbjct: 113 EDPEEPFRYVFDWIVHKGMSVRECKEL-----LHPELQQRYGFNCPVDHLRLR 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,495,392
Number of Sequences: 59808
Number of extensions: 460969
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)