Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A24
         (946 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1040 - 23873354-23874509,23875645-23875796                       32   0.76 
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    31   1.0  
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    30   3.1  
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322...    29   4.1  
06_02_0019 - 10656005-10657511,10657712-10658739                       29   5.4  
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    29   5.4  
01_01_0635 - 4795434-4795461,4795897-4797365                           29   7.1  
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    28   9.4  

>08_02_1040 - 23873354-23874509,23875645-23875796
          Length = 435

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 218 STNTASTFFDFMVLGFGTALLSATAIKPSQESRQTSW-FPALXXNXSXSXR--DSXXXXA 48
           ST T+STF + M L     +++A+ +  + ++R +SW  P +        R  D      
Sbjct: 355 STPTSSTFLEEMALPLAAPIMAASVVTAASKARVSSWCLPGMAAAPHCCGRGGDGGVRGG 414

Query: 47  XCGG 36
            CGG
Sbjct: 415 GCGG 418


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +3

Query: 492 CLFCACASQSRSILVCLLHRCYPAP 566
           CLFC     SR ILVC L RC  AP
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVAP 82


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 475 ETFYKSACFARVHLNQGQFLYAF-YIAVIQRPDCHGF 582
           ETF+ +AC  R HL QG+ + A+ Y+   +  DC GF
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GF 462


>11_01_0419 +
           3226224-3226756,3228010-3228169,3228256-3228435,
           3228525-3228659,3229262-3229344,3229442-3229535,
           3229649-3229735
          Length = 423

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 627 IHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHT 505
           IHK FR++  R  + E +AIRA  NS +     L L +M T
Sbjct: 319 IHKPFRIHLGRGLHGECLAIRADGNSKLSHEIGLELSKMST 359


>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/32 (31%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -3

Query: 638 STSIFINILGY-TSYGAGTTKPWQSGRWITAM 546
           +T+I ++++G   +YGAG+++ W++  ++ AM
Sbjct: 750 NTTIVLDMIGLLVAYGAGSSREWETSGYVIAM 781


>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 693 CGFRINEXMLHLCYVNFLQHFHIHKHFRVYFI-RSRNNETVAIRAL-DNSDVE 541
           C   I+   L+  Y+  +QHFH+  +     + RS+N+ T +I+ L D S ++
Sbjct: 278 CFMMISTKELYTIYITQVQHFHVGDNVTFTLLSRSKNSLTPSIKNLTDESTID 330


>01_01_0635 - 4795434-4795461,4795897-4797365
          Length = 498

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 673 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEEQRLTYFTXGYW 810
           +I+P+   KY      DYFVY AN S++   +N    LT     YW
Sbjct: 155 IISPD---KYARPSAIDYFVYNANSSSS---SNHHPSLTRLPVSYW 194


>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -1

Query: 373 SCTSSEILQQLXX*CSCPYSFRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHF 194
           +C  S+ L+ L     C Y     +        H C++ S +  + E      ++RHPH 
Sbjct: 478 TCKFSDSLKVLPRGLGCVYKGEIMNRSVMIYKLHSCIIQSSMQFQQEVHL-ISKVRHPHL 536

Query: 193 LTL 185
           +TL
Sbjct: 537 VTL 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,242,478
Number of Sequences: 37544
Number of extensions: 354402
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)